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Report for CCDS91676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91676.1 Public Homo sapiens 12 CAPRIN2 24 110 108 CCDS HistoryNCBI Gene:65981Re-query CCDS DB by CCDS ID:91676.1Re-query CCDS DB by GeneID:65981See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540584.2 ENSP00000441005.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540584.2Link to Ensembl Protein Viewer:ENSP00000441005.2Re-query CCDS DB by Nucleotide ID:ENST00000540584Re-query CCDS DB by Protein ID:ENSP00000441005
Original member Current member EBI ENST00000540436.6 ENSP00000442295.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540436.6Link to Ensembl Protein Viewer:ENSP00000442295.2Re-query CCDS DB by Nucleotide ID:ENST00000540436Re-query CCDS DB by Protein ID:ENSP00000442295
Original member Current member NCBI NM_001385504.1 NP_001372433.1 Accepted alive Link to Nucleotide Sequence:NM_001385504.1Link to Protein Sequence:NP_001372433.1Re-query CCDS DB by Nucleotide ID:NM_001385504Re-query CCDS DB by Protein ID:NP_001372433Link to BLAST:NP_001372433.1
Original member Current member NCBI NM_001385505.1 NP_001372434.1 Accepted alive Link to Nucleotide Sequence:NM_001385505.1Link to Protein Sequence:NP_001372434.1Re-query CCDS DB by Nucleotide ID:NM_001385505Re-query CCDS DB by Protein ID:NP_001372434Link to BLAST:NP_001372434.1
Original member Current member NCBI NM_001385506.1 NP_001372435.1 Accepted alive Link to Nucleotide Sequence:NM_001385506.1Link to Protein Sequence:NP_001372435.1Re-query CCDS DB by Nucleotide ID:NM_001385506Re-query CCDS DB by Protein ID:NP_001372435Link to BLAST:NP_001372435.1

Chromosomal Locations for CCDS 91676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 30709902 30710470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30711566 30711629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30713785 30713885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30714959 30715081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30716508 30716676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30719079 30719225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30720811 30720915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30723259 30723314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30724370 30724451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30725966 30726088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30728648 30729325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30730239 30730282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30731343 30731510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30733629 30733711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30734968 30735206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30741020 30741106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30751071 30751133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30753344 30753520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3078 nt):
ATGAAGTCAGCCAAGCCCCAAGTGAACCACAGTCAGCATGGGGAAAGCCAGCGGGCCTTGAGCCCCCTGC
AGTCTACTCTGAGTTCTGCTGCATCTCCTTCCCAAGCGTATGAGACCTATATTGAAAATGGACTCATATG
CCTTAAACACAAAATTAGAAACATCGAGAAAAAGAAGCTCAAACTGGAGGATTATAAGGATCGCCTGAAA
AGTGGAGAGCATCTTAATCCAGACCAGTTGGAAGCTGTAGAGAAATATGAAGAAGTGCTACATAATTTGG
AATTTGCCAAGGAGCTTCAAAAAACCTTTTCTGGGTTGAGCCTAGATCTACTAAAAGCGCAAAAGAAGGC
CCAGAGAAGGGAGCACATGCTAAAACTTGAGGCTGAGAAGAAAAAGCTTCGAACTATACTTCAAGTTCAG
TATGTATTGCAGAACTTGACACAGGAGCACGTACAAAAAGACTTCAAAGGGGGTTTGAATGGTGCAGTGT
ATTTGCCTTCAAAAGAACTTGACTACCTCATTAAGTTTTCAAAACTGACCTGCCCTGAAAGAAATGAAAG
TCTGAGTGTTGAAGACCAGATGGAGCAGTCATCCTTGTACTTTTGGGACCTTTTGGAAGGTAGTGAGAAA
GCAGTGGTAGGAACGACATACAAACACTTGAAGGATCTACTGTCTAAATTGCTGAACTCAGGCTATTTTG
AAAGTATCCCAGTTCCCAAAAATGCCAAGGAAAAGGAAGTACCACTGGAGGAAGAAATGCTAATACAATC
AGAGAAAAAAACACAATTATCGAAGACTGAATCTGTCAAAGAGTCAGAGTCTCTAATGGAATTTGCCCAG
CCAGAGATACAACCACAAGAGTTTCTTAACAGACGCTATATGACAGAAGTAGATTATTCAAACAAACAAG
GCGAAGAGCAACCTTGGGAAGCAGATTATGCTAGAAAACCAAATCTCCCAAAACGTTGGGATATGCTTAC
TGAACCAGATGGTCAAGAGAAGAAACAGGAGTCCTTTAAGTCCTGGGAGGCTTCTGGTAAGCACCAGGAG
GTATCCAAGCCTGCAGTTTCCTTAGAACAGAGGAAACAAGACACCTCAAAACTCAGGTCTACTCTGCCGG
AAGAGCAGAAGAAGCAGGAGATCTCCAAATCCAAGCCATCTCCTAGCCAGTGGAAGCAAGATACACCTAA
ATCCAAAGCAGGGTATGTTCAAGAGGAACAAAAGAAACAGGAGACACCAAAGCTGTGGCCAGTTCAGCTG
CAGAAAGAACAAGATCCAAAGAAGCAAACTCCAAAGTCTTGGACACCTTCCATGCAGAGCGAACAGAACA
CCACCAAGTCATGGACCACTCCCATGTGTGAAGAACAGGATTCAAAACAGCCAGAGACTCCAAAATCCTG
GGAAAACAATGTTGAGAGTCAAAAACACTCTTTAACATCACAGTCACAGATTTCTCCAAAGTCCTGGGGA
GTAGCTACAGCAAGCCTCATACCAAATGACCAGCTGCTGCCCAGGAAGTTGAACACAGAACCCAAAGATG
TGCCTAAGCCTGTGCATCAGCCTGTAGGTTCTTCCTCTACCCTTCCGAAGGATCCAGTATTGAGGAAAGA
AAAACTGCAGGATCTGATGACTCAGATTCAAGGAACTTGTAACTTTATGCAAGAGTCTGTTCTTGACTTT
GACAAACCTTCAAGTGCAATTCCAACGTCACAACCGCCTTCAGCTACTCCAGGTAGCCCCGTAGCATCTA
AAGAACAAAATCTGTCCAGTCAAAGTGATTTTCTTCAAGAGCCGTTACAGGCTACTTCTTCTCCAGTTAC
TTGTAGCTCAAATGCTTGCTTGGTTACTACCGATCAGGCTTCTTCTGGATCTGAAACAGAGTTTATGACC
TCAGAGACTCCTGAGGCAGCAATTCCCCCAGGCAAGCAACCGTCTTCACTAGCTTCTCCAAATCCTCCCA
TGGCAAAGGGCTCTGAACAGGGCTTCCAGTCACCTCCAGCAAGTAGTAGTTCAGTAACCATTAACACAGC
ACCCTTTCAAGCCATGCAGACAGTATTTAACGTTAATGCACCTCTGCCTCCACGAAAAGAACAAGAAATA
AAAGAATCCCCTTATTCACCTGGCTACAATCAAAGTTTTACCACAGCAAGTACACAAACACCACCCCAGT
GCCAACTGCCATCTATACATGTAGAACAAACTGTCCATTCTCAAGAGACTGCACAGACGAATGTGTTTCC
CAGACCTACTCAGCCATTTGTCAATAGCCGGGGATCTGTTAGAGGATGTACTCGTGGTGGGAGATTAATA
ACCAATTCCTATCGGTCCCCTGGTGGTTATAAAGGTTTTGATACTTATAGAGGACTCCCTTCAATTTCCA
ATGGAAATTATAGCCAGCTGCAGTTCCAAGCTAGAGAGTATTCTGGAGCACCTTATTCCCAAAGGGATAA
TTTCCAGCAGTGTTATAAGCGAGGAGGGACATCTGGTGGTCCACGAGCAAATTCGAGAGCAGGGTGGAGT
GATTCTTCTCAGGTGAGCAGCCCAGAAAGAGACAACGAAACCTTTAACAGTGGTGACTCTGGACAAGGAG
ACTCCCGTAGCATGACCCCTGTGGATGTGCCAGTGACAAATCCAGCAGCCACCATACTGCCAGTACACGT
CTACCCTCTGCCTCAGCAGATGCGAGTTGCCTTCTCAGCAGCCAGAACCTCTAATCTGGCCCCTGGAACT
TTAGACCAACCTATTGTGTTTGATCTTCTTCTGAACAACTTAGGAGAAACTTTTGATCTTCAGCTTGGTA
GATTTAATTGCCCAGTGAATGGCACTTACGTTTTCATTTTTCACATGCTAAAGCTGGCAGTGAATGTGCC
ACTGTATGTCAACCTCATGAAGAATGAAGAGGTCTTGGTATCAGCCTATGCCAATGATGGTGCTCCAGAC
CATGAAACTGCTAGCAATCATGCAATTCTTCAGCTCTTCCAGGGAGACCAGATATGGTTACGTCTGCACA
GGGGAGCAATTTATGGAAGTAGCTGGAAATATTCTACGTTTTCAGGCTATCTTCTTTATCAAGATTGA

Translation (1025 aa):
MKSAKPQVNHSQHGESQRALSPLQSTLSSAASPSQAYETYIENGLICLKHKIRNIEKKKLKLEDYKDRLK
SGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREHMLKLEAEKKKLRTILQVQ
YVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQSSLYFWDLLEGSEK
AVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVPLEEEMLIQSEKKTQLSKTESVKESESLMEFAQ
PEIQPQEFLNRRYMTEVDYSNKQGEEQPWEADYARKPNLPKRWDMLTEPDGQEKKQESFKSWEASGKHQE
VSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL
QKEQDPKKQTPKSWTPSMQSEQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWG
VATASLIPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGTCNFMQESVLDF
DKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQATSSPVTCSSNACLVTTDQASSGSETEFMT
SETPEAAIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSVTINTAPFQAMQTVFNVNAPLPPRKEQEI
KESPYSPGYNQSFTTASTQTPPQCQLPSIHVEQTVHSQETAQTNVFPRPTQPFVNSRGSVRGCTRGGRLI
TNSYRSPGGYKGFDTYRGLPSISNGNYSQLQFQAREYSGAPYSQRDNFQQCYKRGGTSGGPRANSRAGWS
DSSQVSSPERDNETFNSGDSGQGDSRSMTPVDVPVTNPAATILPVHVYPLPQQMRVAFSAARTSNLAPGT
LDQPIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFHMLKLAVNVPLYVNLMKNEEVLVSAYANDGAPD
HETASNHAILQLFQGDQIWLRLHRGAIYGSSWKYSTFSGYLLYQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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