CCDS Report for Consensus CDS

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Report for CCDS44334.2 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
44334.2	Public	Homo sapiens	1	MAP10	24	110	108

Public Note for CCDS 44334.1

This CCDS representation uses the 5'-most in-frame translational start codon, as supported by aligning transcript data. It should be noted that this start codon is restricted to higher primate species and is not conserved in other mammals. Lower species use a much better conserved downstream start codon, resulting in a protein that is 142 aa shorter at the N-terminus. It is possible that occasional leaky scanning past the upstream start codon by ribosomes, or alternatively, the presence of a downstream promoter, would sometimes allow use of the downstream start codon in humans. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44334.2

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000418460.4	ENSP00000403208.2	MANE Select	Accepted	alive
		NCBI	NM_019090.3	NP_061963.3	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_061963.3	905	Q9P2G4	905	100%	0	0

Chromosomal Locations for CCDS 44334.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)

Genome Browser links:

Chromosome	Start	Stop	Links
1	232805450	232808167

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGGCGGCCTCGCTGTCCGAGCGGCTCTTCTCGCTGGAGCTGCTGGTGGACTGGGTGCGTTTGGAAGCCC GGCTGCTGCCGTCCCCCGCTGCCGCAGTGGAGCAGGAGGAGGAAGAGGAGGAAAAGGAGCAGGGGGAGGC CTCGTCGCCGCGCGGTCTGTGCCCCGCCGTGGCCTTCCGCCTGCTGGACTTCCCCACGCTGTTGGTTTAC CCTCCTGACGGCCCCGGCGCTCCCGCCGCCGAACCGTGGCCCGGTGTCATCCGCTTCGGTCGCGGCAAGT CCTGCCTCTTCCGCCTGCAGCCTGCTACCCTGCACTGCCGGCTCCTGCGGACCCCGCTTGCCACCTTGCT GCTGCAGCTGCCCCCTGGGCGCCCGACGCCCACCCCACAGCTCCTGGGGGCCTGCGACATTTCGCTGGCC ACCGCAGCGCACAGGGTCGTGGGGCCGGCCGCCTCCGGATGCTCCCACCGTCACCGGGGACGTTTCCCCC TGCATAATCGAGTGGGCGAGCGGACTGGGGACATTGCACTGGCCTACCGCCTGACTGACCTGGGAAGCCG CCTGCTGAGCCAACTTGAGCGGCCCCTCACCTTCACCCGCACAGGAGGAGGAGCGGAGGTCAGTCCCCAA ACCCAGCAGGAAAGACAGCAGCTGCAGCAGCCAGCCTCACAGCCAAGCCCAAAAGAGGCTGATAAGCCGC TGGGGGAGTTAGAAATCCCAGAGGCACAGAAGGATTTGAAGGAAATGGTTAAAAGTAAGGCCGAATGTGA TAATGTGGGTTCTGTGGAGAATGGCAAAACCAATTCTGTTGTTACATGTTCAGGTGCTGGCAATGGGAGA AATGTTAGCTCCCTAAATGAGGAAGTCACAGAATTGGACATGGAGACCAATATATTTTGCCCTCCTCCTT TGTATTACACTAACTTGACCCAAGAAAAACCGCCCCCTGCACAGGCTAAAATCACCATTGAGCCTCAAAT GAATGCACCTGAGGAAATGGATGATGCTTCTCCTGAAAAAAAGCGTGTAAATCCCCCAGCACACAGGAGT TGTCTAAAGCATCCAAGTTCTGCAGCACACGAACATCCTCCAATGCTTGTAAATCCTCCACATATTCAGA ATATAGGAGCAACTAATCAAACATGTCAAACTGAACAAAATCGAATTAATACAATAAGGCAGTTGCCTTT GTTAAATGCTTTGTTAGTTGAGTTGTCCTTGTTATATGACCAACCTGTGACAAGTCCTGCTCATATACAT CCTCACCTAGCCTGGTTATATAGGACTGAGGATAAGAAGTCACCCGAATCTTCTGCCAAATCCACATGCC GGTCTGAAGCCAAGAAGGATAAGCGTTCTGTGGGGGGATGTGAAAAGTCAGTGAGTCTTCAGTATAAAAA GAACCAAATTGAAAACTATAAGGAAGATAAATATTCTGAAAAGAGCAGTGGTGCCCTCCATAAAAGAGTT CCAAAAGGGAGGCTACTTTATGGCTTAACAAATACACTAAGACTACGTTTAAAGCTGACAAATCCTGATA TGTTGGTGGTACATGAAAAAAGAGAACTATATAGAAAAAGACAATCACAAATGTTGGGTACAAAATTCAG AATTCCGTCATCCAAAGTTAAACTATTAAGCTCTGCAGAACAAAGTCAGAAGCCACAACTGCCTGAAGAT AAGTATTTAGATTCAGATGCATCTTTCACTGAAAATAGTGATACCTCAAGACAAATCAGTGGAGTTTTTG ATGAGCCCAGCACAAGTAAAGAAACTAAACTGAAATATGCAACTGAAAAAAAGACAGTTGATTGTAGTAA AAATAGAATCAATAATGTTTCATTGGAAGAAGTTGTGAGTCCTGCAAATTCCATTATTCCAGAAAGGCTT ACCCCTACAAATATTCTGGGAGGAAATGTGGAAATGAAAATCCAAAGTCCATGTGTTTTCCAACAGGATG CTGTTGTTGACAGAATTGTAGATAAGGAAATAGATATTAGACAGGTCAAAACCACAGATAATGACATTCT TATGGCTGATATAAGTGACAAGAGAACAGGTAAAAATAGTTGCTATGAAAACATCTCAGAACTGAAGTAT TCAGATGATTTGTCTAGCCCTTGCTATTCTGAAGATTTCTGTACCAGTGAGGACACCAGCAGAAGTTTCA AAGCTCATGATAGCAGTTCAAGGACAGAAAATCCAAAACATAGTCAATATACAAGCAAGTCTAGTGACAC AGGAGTGTCCAAAAAGAAAAATAGTAGTGACAGGAGTTCTATCCTTAGCCCACCTTTTTCAGCCGGGTCA CCTGTACACTCATACAGAAAATTTCATATTTCAAAGACTCAGGATAAAAGTTTGGAGGAAGCATCTAGTA TCTCTGCTAGTGATTTATCTTCAACACATTGGACTGAACAAAAAGAAAACCAGATAGATCAAAATAGTAT GCACAATTCTGAAATTACAAAGAGAGCTCAAGACATCTCTGTTAAAACAAGAAGTAGTTGGAAATCTTTA GAAAAAAGCCAGTCACCACAAACATCCCAGGTGAGTTCTTACCTGCCTTCAAATGTGTCCGAACTTAATG TCCTGGATAGCAGTACATCAGATCACTTTGAAGAAGGCAATGATGATGTTGGTTCACTAAATATTTCCAA GCAATGCAAAGATATTTGTGAATTAGTAATAAATAAACTTCCAGGATACACAATGTAA
Translation (905 aa):
MAASLSERLFSLELLVDWVRLEARLLPSPAAAVEQEEEEEEKEQGEASSPRGLCPAVAFRLLDFPTLLVY PPDGPGAPAAEPWPGVIRFGRGKSCLFRLQPATLHCRLLRTPLATLLLQLPPGRPTPTPQLLGACDISLA TAAHRVVGPAASGCSHRHRGRFPLHNRVGERTGDIALAYRLTDLGSRLLSQLERPLTFTRTGGGAEVSPQ TQQERQQLQQPASQPSPKEADKPLGELEIPEAQKDLKEMVKSKAECDNVGSVENGKTNSVVTCSGAGNGR NVSSLNEEVTELDMETNIFCPPPLYYTNLTQEKPPPAQAKITIEPQMNAPEEMDDASPEKKRVNPPAHRS CLKHPSSAAHEHPPMLVNPPHIQNIGATNQTCQTEQNRINTIRQLPLLNALLVELSLLYDQPVTSPAHIH PHLAWLYRTEDKKSPESSAKSTCRSEAKKDKRSVGGCEKSVSLQYKKNQIENYKEDKYSEKSSGALHKRV PKGRLLYGLTNTLRLRLKLTNPDMLVVHEKRELYRKRQSQMLGTKFRIPSSKVKLLSSAEQSQKPQLPED KYLDSDASFTENSDTSRQISGVFDEPSTSKETKLKYATEKKTVDCSKNRINNVSLEEVVSPANSIIPERL TPTNILGGNVEMKIQSPCVFQQDAVVDRIVDKEIDIRQVKTTDNDILMADISDKRTGKNSCYENISELKY SDDLSSPCYSEDFCTSEDTSRSFKAHDSSSRTENPKHSQYTSKSSDTGVSKKKNSSDRSSILSPPFSAGS PVHSYRKFHISKTQDKSLEEASSISASDLSSTHWTEQKENQIDQNSMHNSEITKRAQDISVKTRSSWKSL EKSQSPQTSQVSSYLPSNVSELNVLDSSTSDHFEEGNDDVGSLNISKQCKDICELVINKLPGYTM

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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