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Report for CCDS1561.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1561.2 Public Homo sapiens 1 JMJD4 24 110 108 CCDS HistoryNCBI Gene:65094Re-query CCDS DB by CCDS ID:1561.2Re-query CCDS DB by GeneID:65094See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1561.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620518.5 ENSP00000477669.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620518.5Link to Ensembl Protein Viewer:ENSP00000477669.1Re-query CCDS DB by Nucleotide ID:ENST00000620518Re-query CCDS DB by Protein ID:ENSP00000477669
Original member Current member NCBI NM_023007.3 NP_075383.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023007.3Link to Protein Sequence:NP_075383.3Re-query CCDS DB by Nucleotide ID:NM_023007Re-query CCDS DB by Protein ID:NP_075383Link to BLAST:NP_075383.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075383.3 417 Q9H9V9-3 417 100% 0 0

Chromosomal Locations for CCDS 1561.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 227732392 227732676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227732881 227733027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227733414 227733681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227733907 227734032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227734651 227734816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227735012 227735273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGACCGCGAGACGCGCGCCCTCGCCGACAGCCACTTCCGAGGCCTGGGGGTCGATGTCCCCGGCGTCG
GCCAGGCTCCGGGCCGGGTAGCCTTCGTCTCGGAGCCGGGCGCCTTCTCCTACGCCGACTTTGTGCGGGG
CTTCTTGCTGCCCAACCTGCCCTGCGTGTTTTCCAGCGCCTTCACGCAGGGCTGGGGCAGCCGGCGGCGC
TGGGTGACGCCCGCGGGGAGGCCCGACTTCGACCACCTGCTACGGACCTACGGAGACGTGGTTGTACCAG
TTGCAAACTGTGGGGTCCAGGAATACAACTCGAACCCCAAAGAGCACATGACTCTCAGAGACTACATCAC
CTACTGGAAAGAGTACATACAGGCGGGCTACTCCTCTCCCAGGGGCTGTCTCTACCTCAAAGACTGGCAC
TTGTGCAGGGACTTTCCGGTGGAGGACGTTTTCACCCTGCCTGTGTACTTCTCGTCCGACTGGCTGAATG
AGTTCTGGGATGCACTGGATGTGGATGACTACCGCTTTGTCTACGCGGGGCCTGCGGGCAGCTGGTCCCC
GTTCCATGCTGACATCTTCCGCTCCTTCAGCTGGTCTGTCAATGTCTGTGGGAGGAAGAAGTGGCTCCTC
TTCCCCCCAGGGCAGGAAGAGGCCCTGCGGGACCGCCACGGCAACCTGCCCTACGACGTGACCTCCCCAG
CACTCTGCGACACACACCTGCACCCACGGAACCAGCTTGCTGGCCCACCCTTGGAGATCACGCAGGAAGC
GGGCGAGATGGTGTTTGTGCCCAGTGGCTGGCACCACCAGGTGCACAACCTGGATGACACCATCTCCATC
AACCACAACTGGGTCAATGGCTTCAACCTGGCCAACATGTGGCGCTTCTTGCAGCAGGAGCTATGCGCCG
TGCAGGAGGAGGTCAGCGAGTGGAGGGACTCCATGCCCGACTGGCACCACCACTGCCAGGTCATCATGAG
GTCCTGCTCGGGCATCAACTTTGAAGAGTTTTACCACTTCCTCAAGGTCATCGCTGAGAAGAGGCTCCTG
GTCCTGAGGGAGGCAGCCGCTGAGGACGGTGCTGGGTTGGGTTTCGAACAGGCAGCCTTTGATGTTGGGC
GCATCACAGAGGTGCTGGCCTCCTTGGTTGCGCACCCCGACTTCCAGAGAGTGGACACCAGCGCGTTCTC
ACCACAGCCCAAAGAGCTGCTGCAGCAGCTGAGAGAGGCTGTTGATGCTGCTGCGGCCCCATAG

Translation (417 aa):
MDRETRALADSHFRGLGVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSSAFTQGWGSRRR
WVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDWH
LCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRFVYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLL
FPPGQEEALRDRHGNLPYDVTSPALCDTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISI
NHNWVNGFNLANMWRFLQQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLL
VLREAAAEDGAGLGFEQAAFDVGRITEVLASLVAHPDFQRVDTSAFSPQPKELLQQLREAVDAAAAP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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