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Report for CCDS31123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31123.1 Public Homo sapiens 1 OR2T35 24 110 108 CCDS HistoryNCBI Gene:403244Re-query CCDS DB by CCDS ID:31123.1Re-query CCDS DB by GeneID:403244See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641268.1 ENSP00000492995.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641268.1Link to Ensembl Protein Viewer:ENSP00000492995.1Re-query CCDS DB by Nucleotide ID:ENST00000641268Re-query CCDS DB by Protein ID:ENSP00000492995
Original member Current member NCBI NM_001001827.2 NP_001001827.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001827.2Link to Protein Sequence:NP_001001827.1Re-query CCDS DB by Nucleotide ID:NM_001001827Re-query CCDS DB by Protein ID:NP_001001827Link to BLAST:NP_001001827.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001827.1 323 Q8NGX2 323 100% 0 0

Chromosomal Locations for CCDS 31123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248638287 248639258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGCATGGAGGGTCTTCTCCAGAACTCCACTAACTTCGTCCTCACAGGCCTCATCACCCATCCTGCCT
TC
CCCGGGCTTCTCTTTGCAGTAGTCTTCTCCATCTTTGTGGTGGCTATAACAGCCAACTTGGTCATGAT
T
CTGCTCATCCACATGGACTCCCGCCTCCACACACCCATGTACTTCTTGCTCAGCCAGCTCTCCATCATG
GAT
ACCATCTACATCTGTATCACTGTCCCCAAGATGCTCCAGGACCTCCTGTCCAAGGACAAGACCATTT
CC
TTCCTGGGCTGTGCAGTTCAAATCTTCTACCTGACCCTGATTGGAGGGGAATTCTTCCTGCTGGGTCT
C
ATGGCCTATGACCGCTATGTGGCTGTGTGCAACCCTCTACGGTACCCTCTCCTCATGAACCGCAGGGTT
TGC
TTATTCATGGTGGTCGGCTCCTGGGTTGGTGGTTCCTTGGATGGGTTCATGCTGACTCCTGTCACTA
TG
AGTTTCCCCTTCTGTAGATCCCGAGAGATCAATCACTTTTTCTGTGAGATCCCAGCCGTGCTGAAGTT
G
TCTTGCACAGACACGTCACTCTATGAGACCCTGATGTATGCCTGCTGCGTGCTGATGCTGCTTATCCCT
CTA
TCTGTCATCTCTGTGTCCTACACGCACATCCTCCTGACTGTCCACAGGATGAACTCTGCTGAGGGCC
GG
CGCAAAGCCTTTGCTACGTGTTCCTCCCACATTATGGTGGTGAGCGTTTTCTACGGGGCAGCCTTCTA
C
ACCAACGTGCTGCCCCACTCCTACCACACTCCAGAGAAAGATAAAGTGGTGTCTGCCTTCTACACCATC
CTC
ACCCCCATGCTCAACCCACTCATCTACAGCTTGAGGAATAAAGATGTGGCTGCAGCTCTGAGGAAAG
TA
CTAGGGAGATGTGGTTCCTCCCAGAGCATCAGGGTGGCGACTGTGATCAGGAAGGGCTAG


Translation (323 aa):
MGMEGLLQNSTNFVLTGLITHPAFPGLLFAVVFSIFVVAITANLVMILLIHMDSRLHTPMYFLLSQLSIM
D
TIYICITVPKMLQDLLSKDKTISFLGCAVQIFYLTLIGGEFFLLGLMAYDRYVAVCNPLRYPLLMNRRV
C
LFMVVGSWVGGSLDGFMLTPVTMSFPFCRSREINHFFCEIPAVLKLSCTDTSLYETLMYACCVLMLLIP
L
SVISVSYTHILLTVHRMNSAEGRRKAFATCSSHIMVVSVFYGAAFYTNVLPHSYHTPEKDKVVSAFYTI
L
TPMLNPLIYSLRNKDVAAALRKVLGRCGSSQSIRVATVIRKG




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser