NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4648.1 Public Homo sapiens 6 PGBD1 24 110 108 CCDS HistoryNCBI Gene:84547Re-query CCDS DB by CCDS ID:4648.1Re-query CCDS DB by GeneID:84547See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4648.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259883.3 ENSP00000259883.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000259883.3Link to Ensembl Protein Viewer:ENSP00000259883.3Re-query CCDS DB by Nucleotide ID:ENST00000259883Re-query CCDS DB by Protein ID:ENSP00000259883
Original member Current member EBI ENST00000682144.1 ENSP00000506997.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682144.1Link to Ensembl Protein Viewer:ENSP00000506997.1Re-query CCDS DB by Nucleotide ID:ENST00000682144Re-query CCDS DB by Protein ID:ENSP00000506997
Original member Current member NCBI NM_001184743.2 NP_001171672.1 Accepted alive Link to Nucleotide Sequence:NM_001184743.2Link to Protein Sequence:NP_001171672.1Re-query CCDS DB by Nucleotide ID:NM_001184743Re-query CCDS DB by Protein ID:NP_001171672Link to BLAST:NP_001171672.1
Original member Current member NCBI NM_001386059.1 NP_001372988.1 Accepted alive Link to Nucleotide Sequence:NM_001386059.1Link to Protein Sequence:NP_001372988.1Re-query CCDS DB by Nucleotide ID:NM_001386059Re-query CCDS DB by Protein ID:NP_001372988Link to BLAST:NP_001372988.1
Original member Current member NCBI NM_032507.4 NP_115896.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032507.4Link to Protein Sequence:NP_115896.1Re-query CCDS DB by Nucleotide ID:NM_032507Re-query CCDS DB by Protein ID:NP_115896Link to BLAST:NP_115896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171672.1 809 Q96JS3 809 100% 0 0
NP_001372988.1 809 Q96JS3 809 100% 0 0
NP_115896.1 809 Q96JS3 809 100% 0 0

Chromosomal Locations for CCDS 4648.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28283814 28284209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28285551 28285707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28287080 28287168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28296816 28296945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28297895 28297991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28300724 28302284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2430 nt):
ATGTATGAAGCTTTGCCAGGCCCTGCTCCTGAAAATGAAGATGGCCTTGTGAAAGTGAAGGAGGAAGATC
CCACCTGGGAGCAGGTGTGCAACTCACAGGAGGGCAGCTCCCACACTCAGGAGATTTGCCGCCTGCGCTT
TCGGCACTTCTGCTACCAGGAGGCTCACGGACCCCAGGAAGCTCTGGCCCAACTCCGAGAACTTTGTCAT
CAATGGCTGAGACCGGAGATGCACACCAAGGAACAGATAATGGAACTGCTGGTGCTGGAGCAGTTCCTGA
CCATCCTGCCCAAGGAGCTCCAGCCCTGTGTGAAGACATATCCTCTGGAGAGTGGAGAGGAGGCAGTGAC
AGTGCTGGAGAATCTAGAGACAGGAAGTGGAGACACAGGACAACAGGCCTCTGTCTATATTCAGGGACAG
GACATGCACCCAATGGTGGCAGAATATCAAGGAGTCTCTTTGGAGTGTCAGAGCCTCCAGCTCCTGCCTG
GGATAACCACCCTGAAGTGTGAACCTCCACAGCGTCCTCAAGGGAACCCCCAAGAAGTGAGTGGGCCTGT
TCCCCACGGATCAGCTCATCTCCAGGAAAAAAACCCCAGAGACAAGGCTGTAGTGCCTGTGTTTAACCCA
GTCAGGTCCCAGACATTGGTGAAGACTGAGGAAGAAACAGCCCAGGCCGTTGCTGCAGAGAAGTGGTCAC
ATCTGAGTCTGACTCGGAGGAACCTCTGTGGGAACTCAGCTCAGGAGACAGTTATGAGCCTCAGTCCGAT
GACTGAAGAAATTGTAACTAAAGATAGATTGTTTAAAGCAAAGCAAGAAACTTCTGAAGAAATGGAACAA
AGTGGAGAAGCCTCAGGAAAGCCCAACAGAGAGTGTGCACCCCAGATTCCTTGTAGTACTCCTATTGCTA
CTGAAAGGACAGTTGCACATTTGAACACTCTGAAGGACCGTCACCCAGGTGATTTGTGGGCCCGCATGCA
CATCTCATCCCTGGAATATGCTGCAGGAGACATTACCCGAAAAGGGAGAAAAAAAGACAAAGCTCGAGTG
AGTGAACTGCTCCAAGGCCTCTCATTCTCTGGTGACTCAGATGTGGAAAAAGATAATGAGCCTGAGATCC
AGCCTGCTCAAAAGAAGTTAAAGGTATCATGTTTCCCAGAAAAGAGTTGGACCAAAAGAGACATTAAACC
CAATTTTCCAAGCTGGTCAGCACTGGATTCTGGACTTTTGAATCTCAAGAGCGAAAAGTTGAACCCAGTA
GAGCTTTTTGAATTATTTTTTGATGATGAAACATTCAACTTAATTGTCAATGAAACCAATAATTATGCTT
CTCAGAAAAATGTCAGCTTGGAAGTCACAGTTCAGGAAATGAGGTGTGTGTTTGGTGTCTTACTTTTGAG
TGGATTTATGAGGCATCCTAGAAGGGAAATGTATTGGGAAGTCTCTGACACCGATCAGAACCTGGTTAGA
GATGCAATCAGAAGGGACAGATTTGAATTGATTTTCTCAAACCTGCACTTTGCAGATAATGGCCACCTAG
ATCAAAAAGATAAGTTTACAAAGTTGAGACCTCTCATAAAACAAATGAATAAAAATTTCCTCTTGTATGC
TCCCCTGGAAGAATACTATTGCTTTGATAAGTCAATGTGTGAATGCTTTGATAGTGACCAATTCCTGAAT
GGAAAGCCTATTAGAATTGGCTATAAAATTTGGTGTGGTACAACCACACAGGGTTATCTGGTTTGGTTTG
AACCCTATCAAGAAGAATCAACTATGAAGGTAGATGAGGATCCTGATCTTGGGTTAGGTGGAAATCTAGT
GATGAACTTCGCTGATGTTCTTTTAGAGAGAGGTCAGTATCCCTATCACCTGTGTTTTGATAGCTTCTTT
ACAAGTGTCAAATTGTTGTCAGCCTTGAAAAAGAAGGGGGTGAGGGCAACAGGAACAATTCGTGAGAACA
GGACCGAAAAATGTCCCCTTATGAATGTAGAACATATGAAAAAAATGAAGAGAGGGTATTTTGATTTCCG
AATAGAAGAAAACAATGAGATAATTTTGTGTCGTTGGTATGGGGATGGCATTATCAGTCTGTGCTCCAAT
GCTGTGGGCATAGAACCAGTCAATGAGGTAAGCTGTTGTGATGCTGATAACGAAGAAATCCCTCAGATAA
GTCAACCATCCATAGTAAAAGTGTATGATGAATGCAAGGAAGGTGTAGCTAAAATGGATCAAATTATTTC
GAAATACAGGGTGAGGATAAGAAGCAAGAAATGGTACTCAATTTTGGTGAGCTACATGATTGATGTAGCC
ATGAACAATGCATGGCAACTACACAGAGCCTGTAACCCAGGTGCTTCTCTAGACCCCTTGGATTTTCGGA
GATTTGTTGCACATTTCTACTTGGAACACAATGCTCATCTGTCAGATTAG

Translation (809 aa):
MYEALPGPAPENEDGLVKVKEEDPTWEQVCNSQEGSSHTQEICRLRFRHFCYQEAHGPQEALAQLRELCH
QWLRPEMHTKEQIMELLVLEQFLTILPKELQPCVKTYPLESGEEAVTVLENLETGSGDTGQQASVYIQGQ
DMHPMVAEYQGVSLECQSLQLLPGITTLKCEPPQRPQGNPQEVSGPVPHGSAHLQEKNPRDKAVVPVFNP
VRSQTLVKTEEETAQAVAAEKWSHLSLTRRNLCGNSAQETVMSLSPMTEEIVTKDRLFKAKQETSEEMEQ
SGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLWARMHISSLEYAAGDITRKGRKKDKARV
SELLQGLSFSGDSDVEKDNEPEIQPAQKKLKVSCFPEKSWTKRDIKPNFPSWSALDSGLLNLKSEKLNPV
ELFELFFDDETFNLIVNETNNYASQKNVSLEVTVQEMRCVFGVLLLSGFMRHPRREMYWEVSDTDQNLVR
DAIRRDRFELIFSNLHFADNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEEYYCFDKSMCECFDSDQFLN
GKPIRIGYKIWCGTTTQGYLVWFEPYQEESTMKVDEDPDLGLGGNLVMNFADVLLERGQYPYHLCFDSFF
TSVKLLSALKKKGVRATGTIRENRTEKCPLMNVEHMKKMKRGYFDFRIEENNEIILCRWYGDGIISLCSN
AVGIEPVNEVSCCDADNEEIPQISQPSIVKVYDECKEGVAKMDQIISKYRVRIRSKKWYSILVSYMIDVA
MNNAWQLHRACNPGASLDPLDFRRFVAHFYLEHNAHLSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH