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Report for CCDS53843.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53843.3 Public Homo sapiens 12 ARL6IP4 24 110 108 CCDS HistoryNCBI Gene:51329Re-query CCDS DB by CCDS ID:53843.3Re-query CCDS DB by GeneID:51329See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 53843.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53843.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426960.6 ENSP00000406036.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426960.6Link to Ensembl Protein Viewer:ENSP00000406036.2Re-query CCDS DB by Nucleotide ID:ENST00000426960Re-query CCDS DB by Protein ID:ENSP00000406036
Original member Current member EBI ENST00000543566.6 ENSP00000442718.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543566.6Link to Ensembl Protein Viewer:ENSP00000442718.3Re-query CCDS DB by Nucleotide ID:ENST00000543566Re-query CCDS DB by Protein ID:ENSP00000442718
Original member Current member NCBI NM_001278379.2 NP_001265308.2 Accepted alive Link to Nucleotide Sequence:NM_001278379.2Link to Protein Sequence:NP_001265308.2Re-query CCDS DB by Nucleotide ID:NM_001278379Re-query CCDS DB by Protein ID:NP_001265308Link to BLAST:NP_001265308.2
Original member Current member NCBI NM_001400307.1 NP_001387236.1 Accepted alive Link to Nucleotide Sequence:NM_001400307.1Link to Protein Sequence:NP_001387236.1Re-query CCDS DB by Nucleotide ID:NM_001400307Re-query CCDS DB by Protein ID:NP_001387236Link to BLAST:NP_001387236.1
Original member Current member NCBI NM_001400313.1 NP_001387242.1 Accepted alive Link to Nucleotide Sequence:NM_001400313.1Link to Protein Sequence:NP_001387242.1Re-query CCDS DB by Nucleotide ID:NM_001400313Re-query CCDS DB by Protein ID:NP_001387242Link to BLAST:NP_001387242.1
Original member Current member NCBI NM_001400317.1 NP_001387246.1 Accepted alive Link to Nucleotide Sequence:NM_001400317.1Link to Protein Sequence:NP_001387246.1Re-query CCDS DB by Nucleotide ID:NM_001400317Re-query CCDS DB by Protein ID:NP_001387246Link to BLAST:NP_001387246.1
Original member Current member NCBI NM_016638.4 NP_057722.4 Accepted alive Link to Nucleotide Sequence:NM_016638.4Link to Protein Sequence:NP_057722.4Re-query CCDS DB by Nucleotide ID:NM_016638Re-query CCDS DB by Protein ID:NP_057722Link to BLAST:NP_057722.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265308.2 218 Q66PJ3-9 218 100% 0 0
NP_001387236.1 218 Q66PJ3-9 218 100% 0 0
NP_001387242.1 218 Q66PJ3-9 218 100% 0 0
NP_001387246.1 218 Q66PJ3-9 218 100% 0 0
NP_057722.4 218 Q66PJ3-9 218 100% 0 0

Chromosomal Locations for CCDS 53843.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122981140 122981266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122981595 122981879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122981957 122982074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122982469 122982538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122982620 122982676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGCTCACGTCGGCTCCCGCAAGCGCTCGAGGAGTCGCAGCCGGTCCCGGGGACGGGGGTCGGAAAAGA
GAAAGAAGAAGAGCAGGAAAGACACCTCGAGGAACTGCTCGGCCTCCACATCCCAAGAGAGAAGCAAGCA
GAAGGCCCGGAGGAGAACAAGATCCAGCTCCTCCTCCTCTTCTTCCAGTTCTTCTAGCTCCTCTTCTTCC
TCCTCGTCCTCCTCCTCTTCCTCCAGTGATGGCCGGAAGAAGCGGGGGAAGTACAAGGACAAGAGGAGGA
AGAAGAAGAAGAAGAGGAAGAAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACAGCAGGTGGAGGC
TCTGCCGGGCCCCTCGCTGGACCAGTGGCACCGATCAGCTGGGGAGGAAGAGGATGGCCCAGTCCTGACG
GATGAGCAGAAGTCCCGAATCCAGGCCATGAAGCCCATGACCAAGGAGGAGTGGGATGCCCGGCAGAGCA
TCATCCGCAAGGTGGTGGACCCTGAGACGGGGCGCACCAGGCTTATTAAGGGAGATGGCGAGGTCCTAGA
GGAAATCGTAACCAAAGAACGACACAGAGAGATCAACAAGCAAGCCACCCGAGGGGACTGCCTGGCCTTC
CAGATGCGAGCTGGGTTGCTTCCCTGA

Translation (218 aa):
MAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS
SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLT
DEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAF
QMRAGLLP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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