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Report for CCDS7256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7256.1 Public Homo sapiens 10 SLC16A9 24 110 108 CCDS HistoryNCBI Gene:220963Re-query CCDS DB by CCDS ID:7256.1Re-query CCDS DB by GeneID:220963See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395347.1 ENSP00000378756.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395347.1Link to Ensembl Protein Viewer:ENSP00000378756.1Re-query CCDS DB by Nucleotide ID:ENST00000395347Re-query CCDS DB by Protein ID:ENSP00000378756
Original member Current member EBI ENST00000395348.8 ENSP00000378757.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395348.8Link to Ensembl Protein Viewer:ENSP00000378757.3Re-query CCDS DB by Nucleotide ID:ENST00000395348Re-query CCDS DB by Protein ID:ENSP00000378757
Original member Current member NCBI NM_001323981.2 NP_001310910.1 Accepted alive Link to Nucleotide Sequence:NM_001323981.2Link to Protein Sequence:NP_001310910.1Re-query CCDS DB by Nucleotide ID:NM_001323981Re-query CCDS DB by Protein ID:NP_001310910Link to BLAST:NP_001310910.1
Original member Current member NCBI NM_194298.3 NP_919274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194298.3Link to Protein Sequence:NP_919274.1Re-query CCDS DB by Nucleotide ID:NM_194298Re-query CCDS DB by Protein ID:NP_919274Link to BLAST:NP_919274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310910.1 509 Q7RTY1 509 100% 0 0
NP_919274.1 509 Q7RTY1 509 100% 0 0

Chromosomal Locations for CCDS 7256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59652772 59652950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59653675 59654589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59664227 59664322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59672770 59672913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59684096 59684291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGAACTTAAAAAGTCGCCTGACGGTGGATGGGGCTGGGTGATTGTGTTTGTCTCCTTCCTTACTCAGT
TTTTGTGTTACGGATCCCCACTAGCTGTTGGAGTCCTGTACATAGAATGGCTGGATGCCTTTGGTGAAGG
AAAAGGAAAAACAGCCTGGGTTGGATCCCTGGCAAGTGGAGTTGGCTTGCTTGCAAGTCCTGTCTGCAGT
CTCTGTGTCTCATCTTTTGGAGCAAGACCTGTCACAATCTTCAGTGGCTTCATGGTGGCTGGAGGCCTGA
TGTTGAGCAGTTTTGCTCCCAATATCTACTTTCTGTTTTTTTCCTATGGCATTGTTGTAGGTCTTGGATG
TGGTTTATTATACACTGCAACAGTGACCATTACGTGCCAGTATTTTGACGATCGCCGAGGCCTAGCGCTT
GGCCTGATTTCAACAGGTTCAAGCGTTGGCCTTTTCATATATGCTGCTCTGCAGAGGATGCTGGTTGAGT
TCTATGGACTGGATGGATGCTTGCTGATTGTGGGTGCTTTAGCTTTAAATATATTAGCCTGTGGCAGTCT
GATGAGACCCCTCCAATCTTCTGATTGTCCTTTGCCTAAAAAAATAGCTCCAGAAGATCTACCAGATAAA
TACTCCATTTACAATGAAAAAGGAAAGAATCTGGAAGAAAACATAAACATTCTTGACAAGAGCTACAGTA
GTGAGGAAAAATGCAGGATCACGTTAGCCAATGGTGACTGGAAACAAGACAGCCTACTTCATAAAAACCC
CACAGTGACACACACAAAAGAGCCTGAAACGTACAAAAAGAAAGTTGCAGAACAGACATATTTTTGCAAA
CAGCTTGCCAAGAGGAAGTGGCAGTTATATAAAAACTACTGTGGTGAAACTGTGGCTCTTTTTAAAAACA
AAGTATTTTCAGCCCTTTTCATTGCTATCTTACTCTTTGACATCGGAGGGTTTCCACCTTCATTACTTAT
GGAAGATGTAGCAAGAAGTTCAAACGTGAAAGAAGAAGAGTTTATTATGCCACTTATTTCCATTATAGGC
ATTATGACAGCAGTTGGTAAACTGCTTTTAGGGATACTGGCTGACTTCAAGTGGATTAATACCTTGTATC
TTTATGTTGCTACCTTAATCATCATGGGCCTAGCCTTGTGTGCAATTCCATTTGCCAAAAGCTATGTCAC
ATTGGCGTTGCTTTCTGGGATCCTAGGGTTTCTTACTGGTAATTGGTCCATCTTTCCATATGTGACCACG
AAGACTGTGGGAATTGAAAAATTAGCCCATGCCTATGGGATATTAATGTTCTTTGCTGGACTTGGAAATA
GCCTAGGACCACCCATCGTTGGTTGGTTTTATGACTGGACCCAGACCTATGATATTGCATTTTATTTTAG
TGGCTTCTGCGTCCTGCTGGGAGGTTTTATTCTGCTGCTGGCAGCCTTGCCCTCTTGGGATACATGCAAC
AAGCAACTCCCCAAGCCAGCTCCAACAACTTTCTTGTACAAAGTTGCCTCTAATGTTTAG

Translation (509 aa):
MELKKSPDGGWGWVIVFVSFLTQFLCYGSPLAVGVLYIEWLDAFGEGKGKTAWVGSLASGVGLLASPVCS
LCVSSFGARPVTIFSGFMVAGGLMLSSFAPNIYFLFFSYGIVVGLGCGLLYTATVTITCQYFDDRRGLAL
GLISTGSSVGLFIYAALQRMLVEFYGLDGCLLIVGALALNILACGSLMRPLQSSDCPLPKKIAPEDLPDK
YSIYNEKGKNLEENINILDKSYSSEEKCRITLANGDWKQDSLLHKNPTVTHTKEPETYKKKVAEQTYFCK
QLAKRKWQLYKNYCGETVALFKNKVFSALFIAILLFDIGGFPPSLLMEDVARSSNVKEEEFIMPLISIIG
IMTAVGKLLLGILADFKWINTLYLYVATLIIMGLALCAIPFAKSYVTLALLSGILGFLTGNWSIFPYVTT
KTVGIEKLAHAYGILMFFAGLGNSLGPPIVGWFYDWTQTYDIAFYFSGFCVLLGGFILLLAALPSWDTCN
KQLPKPAPTTFLYKVASNV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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