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Report for CCDS43117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43117.1 Public Homo sapiens 3 FILIP1L 24 110 108 CCDS HistoryNCBI Gene:11259Re-query CCDS DB by CCDS ID:43117.1Re-query CCDS DB by GeneID:11259See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354552.7 ENSP00000346560.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354552.7Link to Ensembl Protein Viewer:ENSP00000346560.3Re-query CCDS DB by Nucleotide ID:ENST00000354552Re-query CCDS DB by Protein ID:ENSP00000346560
Original member Current member NCBI NM_182909.4 NP_878913.2 Accepted alive Link to Nucleotide Sequence:NM_182909.4Link to Protein Sequence:NP_878913.2Re-query CCDS DB by Nucleotide ID:NM_182909Re-query CCDS DB by Protein ID:NP_878913Link to BLAST:NP_878913.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878913.2 1135 Q4L180-1 1135 100% 0 0

Chromosomal Locations for CCDS 43117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 99833235 99833261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99848295 99851070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99924230 99924408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99929856 99930029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99930769 99931020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGCGTTCCAGAGGCAGTGATACCGAGGGCTCAGCCCAAAAGAAATTTCCAAGACATACTAAAGGCCACA
GTTTCCAAGGGCCTAAAAACATGAAGCATAGACAGCAAGACAAAGACTCCCCCAGTGAGTCGGATGTAAT
ACTTCCGTGTCCCAAGGCAGAGAAGCCACACAGTGGTAATGGCCACCAAGCAGAAGACCTCTCAAGAGAT
GACCTGTTATTTCTCCTCAGCATTCTGGAGGGAGAACTGCAGGCTCGAGATGAGGTCATAGGCATTTTAA
AGGCTGAAAAAATGGACCTGGCTTTGCTGGAAGCTCAGTATGGGTTTGTCACTCCAAAAAAGGTGTTAGA
GGCTCTCCAGAGAGATGCTTTTCAAGCGAAATCTACCCCTTGGCAGGAGGACATCTATGAGAAACCAATG
AATGAGTTGGACAAAGTTGTGGAAAAACATAAAGAATCTTACAGACGAATCCTGGGACAGCTTTTAGTGG
CAGAAAAATCCCGTAGGCAAACCATATTGGAGTTGGAGGAAGAAAAGAGAAAACATAAAGAATACATGGA
GAAGAGTGATGAATTCATATGCCTACTAGAACAGGAATGTGAAAGATTAAAGAAGCTAATTGATCAAGAA
ATCAAGTCTCAGGAGGAGAAGGAGCAAGAAAAGGAGAAAAGGGTCACCACCCTGAAAGAGGAGCTGACCA
AGCTGAAGTCTTTTGCTTTGATGGTGGTGGATGAACAGCAAAGGCTGACGGCACAGCTCACCCTTCAAAG
ACAGAAAATCCAAGAGCTGACCACAAATGCAAAGGAAACACATACCAAACTAGCCCTTGCTGAAGCCAGA
GTTCAGGAGGAAGAGCAGAAGGCAACCAGACTAGAGAAGGAACTGCAAACGCAGACCACAAAGTTTCACC
AAGACCAAGACACAATTATGGCGAAGCTCACCAATGAGGACAGTCAAAATCGCCAGCTTCAACAAAAGCT
GGCAGCACTCAGCCGGCAGATTGATGAGTTAGAAGAGACAAACAGGTCTTTACGAAAAGCAGAAGAGGAG
CTGCAAGATATAAAAGAAAAAATCAGTAAGGGAGAATATGGAAACGCTGGTATCATGGCTGAAGTGGAAG
AGCTCAGGAAACGTGTGCTAGATATGGAAGGGAAAGATGAAGAGCTCATAAAAATGGAGGAGCAGTGCAG
AGATCTCAATAAGAGGCTTGAAAGGGAGACGTTACAGAGTAAAGACTTTAAACTAGAGGTTGAAAAACTC
AGTAAAAGAATTATGGCTCTGGAAAAGTTAGAAGACGCTTTCAACAAAAGCAAACAAGAATGCTACTCTC
TGAAATGCAATTTAGAAAAAGAAAGGATGACCACAAAGCAGTTGTCTCAAGAACTGGAGAGTTTAAAAGT
AAGGATCAAAGAGCTAGAAGCCATTGAAAGTCGGCTAGAAAAGACAGAATTCACTCTAAAAGAGGATTTA
ACTAAACTGAAAACATTAACTGTGATGTTTGTAGATGAACGGAAAACAATGAGTGAAAAATTAAAGAAAA
CTGAAGATAAATTACAAGCTGCTTCTTCTCAGCTTCAAGTGGAGCAAAATAAAGTAACAACAGTTACTGA
GAAGTTAATTGAGGAAACTAAAAGGGCGCTCAAGTCCAAAACCGATGTAGAAGAAAAGATGTACAGCGTA
ACCAAGGAGAGAGATGATTTAAAAAACAAATTGAAAGCGGAAGAAGAGAAAGGAAATGATCTCCTGTCAA
GAGTTAATATGTTGAAAAATAGGCTTCAATCATTGGAAGCAATTGAGAAAGATTTCCTAAAAAACAAATT
AAATCAAGACTCTGGGAAATCCACAACAGCATTACACCAAGAAAACAATAAGATTAAGGAGCTCTCTCAA
GAAGTGGAAAGACTGAAACTGAAGCTAAAGGACATGAAAGCCATTGAGGATGACCTCATGAAAACAGAAG
ATGAATATGAGACTCTAGAACGAAGGTATGCTAATGAACGAGACAAAGCTCAATTTTTATCTAAAGAGCT
AGAACATGTTAAAATGGAACTTGCTAAGTACAAGTTAGCAGAAAAGACAGAGACCAGCCATGAACAATGG
CTTTTCAAAAGGCTTCAAGAAGAAGAAGCTAAGTCAGGGCACCTCTCAAGAGAAGTGGATGCATTAAAAG
AGAAAATTCATGAATACATGGCAACTGAAGACCTAATATGTCACCTCCAGGGAGATCACTCAGTCCTGCA
AAAAAAACTAAATCAACAAGAAAACAGGAACAGAGATTTAGGAAGAGAGATTGAAAACCTCACTAAGGAG
TTAGAGAGGTACCGGCATTTCAGTAAGAGCCTCAGGCCTAGTCTCAATGGAAGAAGAATTTCCGATCCTC
AAGTATTTTCTAAAGAAGTTCAGACAGAAGCAGTAGACAATGAACCACCTGATTACAAGAGCCTCATTCC
TCTGGAACGTGCAGTCATCAATGGTCAGTTATATGAGGAGAGTGAGAATCAAGACGAGGACCCTAATGAT
GAGGGATCTGTGCTGTCCTTCAAATGCAGCCAGTCTACTCCATGTCCTGTTAACAGAAAGCTATGGATTC
CCTGGATGAAATCCAAGGAGGGCCATCTTCAGAATGGAAAAATGCAAACTAAACCCAATGCCAACTTTGT
GCAACCTGGAGATCTAGTCCTAAGCCACACACCTGGGCAGCCACTTCATATAAAGGTTACTCCAGACCAT
GTACAAAACACAGCCACTCTTGAAATCACAAGTCCAACCACAGAGAGTCCTCACTCTTACACGAGTACTG
CAGTGATACCGAACTGTGGCACGCCAAAGCAAAGGATAACCATCCTCCAAAACGCCTCCATAACACCAGT
AAAGTCCAAAACCTCTACCGAAGACCTCATGAATTTAGAACAAGGCATGTCCCCAATTACCATGGCAACC
TTTGCCAGAGCACAGACCCCAGAGTCTTGTGGTTCTCTAACTCCAGAAAGGACAATGTCCCCTATTCAGG
TTTTGGCTGTGACTGGTTCAGCTAGCTCTCCTGAGCAGGGACGCTCCCCAGAACCAACAGAAATCAGTGC
CAAGCATGCGATATTCAGAGTCTCCCCAGACCGGCAGTCATCATGGCAGTTTCAGCGTTCAAACAGCAAT
AGCTCAAGTGTGATAACTACTGAGGATAATAAAATCCACATTCACTTAGGAAGTCCTTACATGCAAGCTG
TAGCCAGCCCTGTGAGACCTGCCAGCCCTTCAGCACCACTGCAGGATAACCGAACTCAAGGCTTAATTAA
CGGGGCACTAAACAAAACAACCAATAAAGTCACCAGCAGTATTACTATCACACCAACAGCCACACCTCTT
CCTCGACAATCACAAATTACAGTGGAACCACTTCTTCTGCCTCATTGA

Translation (1135 aa):
MRSRGSDTEGSAQKKFPRHTKGHSFQGPKNMKHRQQDKDSPSESDVILPCPKAEKPHSGNGHQAEDLSRD
DLLFLLSILEGELQARDEVIGILKAEKMDLALLEAQYGFVTPKKVLEALQRDAFQAKSTPWQEDIYEKPM
NELDKVVEKHKESYRRILGQLLVAEKSRRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQE
IKSQEEKEQEKEKRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEAR
VQEEEQKATRLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEE
LQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLERETLQSKDFKLEVEKL
SKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKVRIKELEAIESRLEKTEFTLKEDL
TKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSV
TKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFLKNKLNQDSGKSTTALHQENNKIKELSQ
EVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELAKYKLAEKTETSHEQW
LFKRLQEEEAKSGHLSREVDALKEKIHEYMATEDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLTKE
LERYRHFSKSLRPSLNGRRISDPQVFSKEVQTEAVDNEPPDYKSLIPLERAVINGQLYEESENQDEDPND
EGSVLSFKCSQSTPCPVNRKLWIPWMKSKEGHLQNGKMQTKPNANFVQPGDLVLSHTPGQPLHIKVTPDH
VQNTATLEITSPTTESPHSYTSTAVIPNCGTPKQRITILQNASITPVKSKTSTEDLMNLEQGMSPITMAT
FARAQTPESCGSLTPERTMSPIQVLAVTGSASSPEQGRSPEPTEISAKHAIFRVSPDRQSSWQFQRSNSN
SSSVITTEDNKIHIHLGSPYMQAVASPVRPASPSAPLQDNRTQGLINGALNKTTNKVTSSITITPTATPL
PRQSQITVEPLLLPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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