NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8217.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8217.2 Public Homo sapiens 11 ARAP1 24 110 108 CCDS HistoryNCBI Gene:116985Re-query CCDS DB by CCDS ID:8217.2Re-query CCDS DB by GeneID:116985See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 8217.1
The coding region has been updated to represent an alternative 5' splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8217.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334211.12 ENSP00000335506.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000334211.12Link to Ensembl Protein Viewer:ENSP00000335506.8Re-query CCDS DB by Nucleotide ID:ENST00000334211Re-query CCDS DB by Protein ID:ENSP00000335506
Original member Current member NCBI NM_015242.5 NP_056057.2 Accepted alive Link to Nucleotide Sequence:NM_015242.5Link to Protein Sequence:NP_056057.2Re-query CCDS DB by Nucleotide ID:NM_015242Re-query CCDS DB by Protein ID:NP_056057Link to BLAST:NP_056057.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056057.2 1205 Q96P48-4 1205 100% 0 0

Chromosomal Locations for CCDS 8217.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72685664 72685681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72686042 72686191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72687439 72687502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72687688 72687738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72688455 72688537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72692753 72692785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72693325 72693470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72693692 72693805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72694980 72695097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72695387 72695455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72695542 72695628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72695718 72695865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72696549 72696654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72696983 72697195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72697323 72697486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72697598 72697649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72697911 72698106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72699005 72699107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72699417 72699552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72701649 72701783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72702905 72703079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72704152 72704334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72705805 72705890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72707175 72707374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72709870 72709976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72710385 72710587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72711021 72711141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72711430 72711499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72712196 72712339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72712438 72712568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72713176 72713187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3618 nt):
ATGACCAAGAAGGAGGAGCCCCCACCGAGCCGAGTCCCACGGGCCGTGCGCGTGGCCAGTCTGCTGAGCG
AGGGAGAGGAACTGTCTGGGGACGACCAAGGGGATGAGGAAGAGGATGACCACGCCTATGAGGGCGTCCC
CAATGGCGGATGGCATACCAGCAGCCTGAGCTTGTCCTTGCCCAGCACAATAGCTGCGCCACACCCCATG
GACGGGCCGCCTGGGGGCTCCACCCCCGTCACACCAGTCATCAAGGCTGGCTGGCTGGACAAGAACCCAC
CGCAGGGATCTTACATCTATCAGAAACGATGGGTGAGACTGGATACTGATCACCTGCGATACTTTGACAG
TAACAAGGACGCTTACTCTAAGCGCTTTATCTCTGTGGCCTGCATCTCCCACGTGGCTGCCATCGGGGAC
CAGAAGTTTGAAGTGATCACAAACAACCGAACCTTTGCCTTCCGGGCAGAGAGTGATGTGGAGCGGAAGG
AGTGGATGCAGGCCCTGCAGCAGGCCATGGCTGAGCAGCGTGCCCGGGCCCGGCTCTCTAGCGCTTATCT
GCTGGGAGTTCCAGGCTCAGAGCAGCCTGACCGCGCTGGCAGCCTGGAGCTTCGTGGCTTCAAGAATAAG
CTGTACGTGGCCGTGGTCGGGGACAAAGTGCAGCTCTACAAGAATCTAGAGGAGTACCACCTGGGCATTG
GCATCACCTTCATCGACATGAGCGTGGGCAACGTGAAGGAAGTGGACCGGCGCAGCTTCGACCTCACCAC
GCCCTACCGCATCTTCAGCTTCTCTGCTGACTCAGAGCTAGAGAAGGAGCAGTGGTTGGAGGCCATGCAG
GGAGCCATCGCTGAGGCCCTGTCTACCTCGGAGGTGGCCGAGCGCATCTGGGCTGCAGCCCCCAACAGGT
TCTGTGCTGACTGCGGGGCTCCTCAGCCTGACTGGGCCTCCATCAACCTCTGTGTTGTTATCTGCAAGCG
CTGTGCAGGGGAGCACCGTGGCCTGGGCGCTGGCGTCTCCAAGGTGCGGAGCCTGAAGATGGACAGGAAG
GTGTGGACAGAAACACTTATCGAGCTCTTCTTACAGCTGGGGAATGGCGCTGGGAACCGCTTCTGGGCAG
CCAACGTGCCCCCCAGTGAGGCCCTGCAGCCCAGCAGCAGCCCCAGCACCCGGCGGTGCCACCTGGAGGC
CAAGTACCGTGAGGGCAAGTACCGCCGCTACCACCCGCTCTTTGGCAACCAGGAGGAGCTGGACAAGGCC
CTGTGTGCTGCAGTCACCACCACAGACCTGGCTGAGACCCAGGCGCTCCTGGGCTGTGGGGCTGGGATCA
ACTGCTTCTCGGGGGACCCTGAGGCCCCCACGCCCCTGGCTCTTGCAGAGCAGGCGGGGCAGACGCTGCA
GATGGAATTCCTTCGGAACAACCGGACCACAGAGGTGCCTCGGCTGGACTCGATGAAGCCCCTGGAAAAG
CACTACTCAGTTGTCCTGCCGACCGTGAGCCACAGTGGCTTCCTCTACAAGACTGCCTCTGCCGGCAAGC
TGCTACAGGACCGCCGGGCCCGGGAAGAGTTCAGCCGGCGCTGGTGTGTCCTTGGTGACGGGGTCCTGAG
CTACTTTGAGAATGAGCGGGCAGTGACCCCCAATGGAGAGATTCGGGCCAGCGAGATTGTGTGCCTGGCA
GTGCCCCCTCCTGACACCCATGGCTTTGAGCACACCTTTGAGGTGTACACGGAGGGAGAACGGCTGTACC
TGTTTGGGCTGGAGAGTGCGGAGCAGGCTCATGAGTGGGTCAAGTGTATTGCTAAGGCATTCGTGCCTCC
CCTAGCCGAGGATCTGCTGGCCCGGGATTTTGAGCGGCTGGGACGCCTACCCTACAAAGCTGGCCTGAGC
CTACAGCGGGCCCAGGAGGGCTGGTTCTCTCTCAGTGGCTCGGAGCTCCGTGCTGTCTTCCCGGAGGGGC
CCTGCGAAGAGCCGCTGCAACTACGGAAACTGCAGGAGCTTTCCATCCAGGGGGACAGTGAGAACCAGGT
GCTGGTGCTGGTGGAGCGAAGGAGGACACTGTACATACAGGGCGAGCGGCGGCTGGACTTCATGGGTTGG
CTGGGGGCCATCCAGAAAGCAGCCGCCAGCATGGGGGACACGCTGTCGGAGCAGCAGCTTGGGGACTCGG
ATATCCCGGTGATCGTGTACCGCTGTGTGGACTACATCACGCAGTGCGGCCTGACCTCCGAGGGCATCTA
CCGCAAGTGTGGGCAGACATCGAAGACACAGCGGCTGCTGGAGAGCCTGCGGCAGGATGCGCGCTCTGTG
CACCTCAAGGAGGGCGAGCAGCACGTGGATGATGTTTCCTCGGCGCTCAAGCGCTTCCTGCGCGACCTGC
CTGATGGGCTCTTCACTCGCGCCCAGCGCCTAACCTGGCTGGAGGCCTCAGAGATTGAGGACGAGGAGGA
GAAGGTCTCCAGGTACCGAGAGCTGCTGGTGCGGCTGCCCCCTGTCAACCGGGCCACAGTGAAGGCCCTT
ATCAGCCACCTGTACTGTGTTCAGTGCTTCTCAGACACGAACCAGATGAACGTGCACAACCTGGCAATTG
TGTTTGGGCCCACGCTCTTCCAGACAGATGGGCAGGACTACAAGGCTGGCCGTGTGGTGGAAGACCTCAT
TAACCACTATGTGGTGGTGTTTAGTGTGGATGAGGAAGAGCTCAGGAAGCAGCGGGAGGAGATCACTGCC
ATTGTGAAGATGCGCGTGGCTGGCACTGCCAGTGGGACCCAGCATGCCGGTGACTTCATCTGCACAGTGT
ATCTGGAAGAGAAGAAGGCAGAGACTGAGCAGCATATCAAGGTCCCAGCATCCATGACTGCTGAGGAGCT
CACCCTGGAGATCCTGGATCGCCGGAACGTGGGCATCAGGGAGAAGGACTATTGGACCTGCTTTGAGGTC
AACGAGAGGGAGGAGGCAGAGCGCCCCCTGCACTTTGCGGAGAAGGTGCTGCCCATCCTGCACGGGCTGG
GCACGGACAGCCACCTGGTGGTGAAGAAGCACCAGGCCATGGAGGCCATGCTGCTGTACCTGGCCAGCCG
TGTCGGTGACACCAAGCATGGCATGATGAAGTTCCGTGAGGACCGCAGCCTCCTGGGCCTGGGCCTGCCC
TCAGGTGGCTTCCACGATCGCTACTTCATCCTCAACAGCAGCTGCTTGCGGCTCTACAAGGAGGTCCGGA
GCCAGAGGCCGTGGAGCGGGGCCCCTGAGACCAGTCACCGGCCTGAGAAGGAGTGGCCTATTAAGAGTCT
CAAAGTCTACCTGGGAGTGAAGAAGAAACTCAGGCCACCCACCTGCTGGGGCTTCACAGTGGTGCATGAG
ACAGAGAAACATGAGAAGCAGCAGTGGTACCTCTGCTGTGACACACAGATGGAGCTCCGGGAGTGGTTCG
CTACCTTTCTGTTTGTGCAGCATGACGGCCTGGTGTGGCCCTCAGAGCCCTCACGCGTGTCCCGGGCAGT
GCCTGAGGTCCGGCTGGGTAGTGTGTCACTGATCCCCCTTCGAGGTAGTGAAAATGAAATGCGCCGGAGT
GTGGCTGCCTTCACCGCGGACCCTCTGTCTCTTCTGCGCAACGTCTGA

Translation (1205 aa):
MTKKEEPPPSRVPRAVRVASLLSEGEELSGDDQGDEEEDDHAYEGVPNGGWHTSSLSLSLPSTIAAPHPM
DGPPGGSTPVTPVIKAGWLDKNPPQGSYIYQKRWVRLDTDHLRYFDSNKDAYSKRFISVACISHVAAIGD
QKFEVITNNRTFAFRAESDVERKEWMQALQQAMAEQRARARLSSAYLLGVPGSEQPDRAGSLELRGFKNK
LYVAVVGDKVQLYKNLEEYHLGIGITFIDMSVGNVKEVDRRSFDLTTPYRIFSFSADSELEKEQWLEAMQ
GAIAEALSTSEVAERIWAAAPNRFCADCGAPQPDWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRK
VWTETLIELFLQLGNGAGNRFWAANVPPSEALQPSSSPSTRRCHLEAKYREGKYRRYHPLFGNQEELDKA
LCAAVTTTDLAETQALLGCGAGINCFSGDPEAPTPLALAEQAGQTLQMEFLRNNRTTEVPRLDSMKPLEK
HYSVVLPTVSHSGFLYKTASAGKLLQDRRAREEFSRRWCVLGDGVLSYFENERAVTPNGEIRASEIVCLA
VPPPDTHGFEHTFEVYTEGERLYLFGLESAEQAHEWVKCIAKAFVPPLAEDLLARDFERLGRLPYKAGLS
LQRAQEGWFSLSGSELRAVFPEGPCEEPLQLRKLQELSIQGDSENQVLVLVERRRTLYIQGERRLDFMGW
LGAIQKAAASMGDTLSEQQLGDSDIPVIVYRCVDYITQCGLTSEGIYRKCGQTSKTQRLLESLRQDARSV
HLKEGEQHVDDVSSALKRFLRDLPDGLFTRAQRLTWLEASEIEDEEEKVSRYRELLVRLPPVNRATVKAL
ISHLYCVQCFSDTNQMNVHNLAIVFGPTLFQTDGQDYKAGRVVEDLINHYVVVFSVDEEELRKQREEITA
IVKMRVAGTASGTQHAGDFICTVYLEEKKAETEQHIKVPASMTAEELTLEILDRRNVGIREKDYWTCFEV
NEREEAERPLHFAEKVLPILHGLGTDSHLVVKKHQAMEAMLLYLASRVGDTKHGMMKFREDRSLLGLGLP
SGGFHDRYFILNSSCLRLYKEVRSQRPWSGAPETSHRPEKEWPIKSLKVYLGVKKKLRPPTCWGFTVVHE
TEKHEKQQWYLCCDTQMELREWFATFLFVQHDGLVWPSEPSRVSRAVPEVRLGSVSLIPLRGSENEMRRS
VAAFTADPLSLLRNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH