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Report for CCDS12059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12059.1 Public Homo sapiens 19 CIRBP 24 110 108 CCDS HistoryNCBI Gene:1153Re-query CCDS DB by CCDS ID:12059.1Re-query CCDS DB by GeneID:1153See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320936.9 ENSP00000322887.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320936.9Link to Ensembl Protein Viewer:ENSP00000322887.4Re-query CCDS DB by Nucleotide ID:ENST00000320936Re-query CCDS DB by Protein ID:ENSP00000322887
Original member Current member EBI ENST00000586472.5 ENSP00000465779.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586472.5Link to Ensembl Protein Viewer:ENSP00000465779.1Re-query CCDS DB by Nucleotide ID:ENST00000586472Re-query CCDS DB by Protein ID:ENSP00000465779
Original member Current member EBI ENST00000585630.5 ENSP00000466110.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000585630.5Link to Ensembl Protein Viewer:ENSP00000466110.1Re-query CCDS DB by Nucleotide ID:ENST00000585630Re-query CCDS DB by Protein ID:ENSP00000466110
Original member Current member EBI ENST00000588090.5 ENSP00000466207.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588090.5Link to Ensembl Protein Viewer:ENSP00000466207.1Re-query CCDS DB by Nucleotide ID:ENST00000588090Re-query CCDS DB by Protein ID:ENSP00000466207
Original member Current member EBI ENST00000588030.5 ENSP00000468788.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588030.5Link to Ensembl Protein Viewer:ENSP00000468788.1Re-query CCDS DB by Nucleotide ID:ENST00000588030Re-query CCDS DB by Protein ID:ENSP00000468788
Original member Current member NCBI NM_001280.3 NP_001271.1 Accepted alive Link to Nucleotide Sequence:NM_001280.3Link to Protein Sequence:NP_001271.1Re-query CCDS DB by Nucleotide ID:NM_001280Re-query CCDS DB by Protein ID:NP_001271Link to BLAST:NP_001271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271.1 172 Q14011-1 172 100% 0 0

Chromosomal Locations for CCDS 12059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1270934 1271036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1271140 1271246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1271329 1271467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1271551 1271632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1271981 1272051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1272427 1272443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCATCAGATGAAGGCAAACTTTTTGTTGGAGGGCTGAGTTTTGACACCAATGAGCAGTCGCTGGAGC
AGGTCTTCTCAAAGTACGGACAGATCTCTGAAGTGGTGGTTGTGAAAGACAGGGAGACCCAGAGATCTCG
GGGATTTGGGTTTGTCACCTTTGAGAACATTGACGACGCTAAGGATGCCATGATGGCCATGAATGGGAAG
TCTGTAGATGGACGGCAGATCCGAGTAGACCAGGCAGGCAAGTCGTCAGACAACCGATCCCGTGGGTACC
GTGGTGGCTCTGCCGGGGGCCGGGGCTTCTTCCGTGGGGGCCGAGGACGGGGCCGTGGGTTCTCTAGAGG
AGGAGGGGACCGAGGCTATGGGGGGAACCGGTTCGAGTCCAGGAGTGGGGGCTACGGAGGCTCCAGAGAC
TACTATAGCAGCCGGAGTCAGAGTGGTGGCTACAGTGACCGGAGCTCGGGCGGGTCCTACAGAGACAGTT
ATGACAGTTACGCTACACACAACGAGTAA

Translation (172 aa):
MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK
SVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRD
YYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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