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Report for CCDS30654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30654.1 Public Homo sapiens 1 THEMIS2 24 110 108 CCDS HistoryNCBI Gene:9473Re-query CCDS DB by CCDS ID:30654.1Re-query CCDS DB by GeneID:9473See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30654.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373927.7 ENSP00000363037.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373927.7Link to Ensembl Protein Viewer:ENSP00000363037.3Re-query CCDS DB by Nucleotide ID:ENST00000373927Re-query CCDS DB by Protein ID:ENSP00000363037
Original member Current member NCBI NM_001039477.3 NP_001034566.1 Accepted alive Link to Nucleotide Sequence:NM_001039477.3Link to Protein Sequence:NP_001034566.1Re-query CCDS DB by Nucleotide ID:NM_001039477Re-query CCDS DB by Protein ID:NP_001034566Link to BLAST:NP_001034566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034566.1 123 Q5TEJ8-4 123 100% 0 0

Chromosomal Locations for CCDS 30654.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27872572 27872665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27876588 27876728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27885295 27885431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGAGCCGGTGCCGCTGCAGGACTTCGTGCGCGCCTTGGACCCCGCCTCCCTCCCGCGCGTGCTGCGGG
TCTGCTCGGGGGTCTACTTCGAGGGCTCCATCTATGAGATCTCTGGGAATGAGTGCTGCCTCTCCACGGG
GGACCTGATCAAGGTCACCCAGGTCCGCCTCCAGAAGGTGGTCTGTGAGAACCCGAAGACCAGCCAGACC
ATGGAGCTCGCCCCCAACTTCCAGGTCTTCTCAAGTCTTAGGATTGCAGCAACACGCTCGGCTGCCCAAA
CCCAAGGCGAAGACCTTGCCAGAGTTCATCAAGGATGGCTCCAGTACGTACAGCAAGATTCCTGCCCACA
GGAAGGGCCACAGGCCCGCTAA

Translation (123 aa):
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVCENPKTSQT
MELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGPQAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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