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Report for CCDS14129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14129.1 Public Homo sapiens X PNPLA4 24 110 108 CCDS HistoryNCBI Gene:8228Re-query CCDS DB by CCDS ID:14129.1Re-query CCDS DB by GeneID:8228See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381042.9 ENSP00000370430.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381042.9Link to Ensembl Protein Viewer:ENSP00000370430.4Re-query CCDS DB by Nucleotide ID:ENST00000381042Re-query CCDS DB by Protein ID:ENSP00000370430
Original member Current member EBI ENST00000444736.5 ENSP00000415245.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444736.5Link to Ensembl Protein Viewer:ENSP00000415245.1Re-query CCDS DB by Nucleotide ID:ENST00000444736Re-query CCDS DB by Protein ID:ENSP00000415245
Original member Current member NCBI NM_001142389.2 NP_001135861.1 Accepted alive Link to Nucleotide Sequence:NM_001142389.2Link to Protein Sequence:NP_001135861.1Re-query CCDS DB by Nucleotide ID:NM_001142389Re-query CCDS DB by Protein ID:NP_001135861Link to BLAST:NP_001135861.1
Original member Current member NCBI NM_004650.3 NP_004641.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004650.3Link to Protein Sequence:NP_004641.1Re-query CCDS DB by Nucleotide ID:NM_004650Re-query CCDS DB by Protein ID:NP_004641Link to BLAST:NP_004641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135861.1 253 P41247-1 253 100% 0 0
NP_004641.1 253 P41247-1 253 100% 0 0

Chromosomal Locations for CCDS 14129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7900686 7900817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7901989 7902141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7912028 7912093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7921713 7921848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7922004 7922098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7925940 7926119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAAGCACATCAACCTATCATTTGCAGCGTGTGGATTTCTGGGCATTTACCACTTGGGGGCAGCATCTG
CACTTTGCAGACATGGCAAAAAACTTGTGAAGGATGTCAAAGCCTTCGCTGGGGCGTCTGCGGGATCGTT
GGTTGCTTCTGTTCTGCTAACAGCACCAGAAAAAATAGAGGAATGTAACCAATTTACCTACAAGTTTGCC
GAAGAAATCAGAAGGCAGTCTTTCGGGGCAGTAACGCCCGGTTATGACTTCATGGCCCGACTAAGAAGTG
GGATGGAGTCGATTCTTCCTCCCAGCGCTCACGAGCTGGCCCAGAACCGACTGCACGTATCCATCACCAA
CGCCAAAACCAGAGAAAATCACTTAGTCTCCACTTTTTCCTCCAGGGAGGACCTCATTAAGGTCCTCCTA
GCCAGCAGTTTTGTGCCCATTTATGCAGGACTGAAGCTAGTGGAATACAAAGGGCAGAAGTGGGTGGACG
GAGGCCTCACCAACGCTCTTCCCATCCTGCCCGTCGGCCGGACAGTAACCATCTCCCCCTTCAGTGGACG
ACTGGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGTTAATATCGCCAAGCAGGATATCATG
TTGTCCCTGGCAAACCTGGTGAGACTCAACCAAGCCCTTTTTCCCCCAAGCAAGAGGAAAATGGAATCTT
TGTATCAGTGTGGTTTTGATGACACTGTTAAGTTTTTACTTAAAGAAAATTGGTTTGAATAA

Translation (253 aa):
MKHINLSFAACGFLGIYHLGAASALCRHGKKLVKDVKAFAGASAGSLVASVLLTAPEKIEECNQFTYKFA
EEIRRQSFGAVTPGYDFMARLRSGMESILPPSAHELAQNRLHVSITNAKTRENHLVSTFSSREDLIKVLL
ASSFVPIYAGLKLVEYKGQKWVDGGLTNALPILPVGRTVTISPFSGRLDISPQDKGQLDLYVNIAKQDIM
LSLANLVRLNQALFPPSKRKMESLYQCGFDDTVKFLLKENWFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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