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Report for CCDS87283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87283.1 Public Homo sapiens 4 CASP3 24 110 108 CCDS HistoryNCBI Gene:836Re-query CCDS DB by CCDS ID:87283.1Re-query CCDS DB by GeneID:836See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87283.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393585.6 ENSP00000377210.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393585.6Link to Ensembl Protein Viewer:ENSP00000377210.2Re-query CCDS DB by Nucleotide ID:ENST00000393585Re-query CCDS DB by Protein ID:ENSP00000377210
Original member Current member EBI ENST00000393588.8 ENSP00000377213.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393588.8Link to Ensembl Protein Viewer:ENSP00000377213.4Re-query CCDS DB by Nucleotide ID:ENST00000393588Re-query CCDS DB by Protein ID:ENSP00000377213
Original member Current member EBI ENST00000517513.5 ENSP00000428372.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517513.5Link to Ensembl Protein Viewer:ENSP00000428372.1Re-query CCDS DB by Nucleotide ID:ENST00000517513Re-query CCDS DB by Protein ID:ENSP00000428372
Original member Current member NCBI NM_001354781.2 NP_001341710.1 Accepted alive Link to Nucleotide Sequence:NM_001354781.2Link to Protein Sequence:NP_001341710.1Re-query CCDS DB by Nucleotide ID:NM_001354781Re-query CCDS DB by Protein ID:NP_001341710Link to BLAST:NP_001341710.1
Original member Current member NCBI NM_001354782.2 NP_001341711.1 Accepted alive Link to Nucleotide Sequence:NM_001354782.2Link to Protein Sequence:NP_001341711.1Re-query CCDS DB by Nucleotide ID:NM_001354782Re-query CCDS DB by Protein ID:NP_001341711Link to BLAST:NP_001341711.1

Chromosomal Locations for CCDS 87283.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 184629436 184629501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184631765 184631940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184632268 184632396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184635294 184635418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184638401 184638453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGGAGAACACTGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGATCATACATGGAA
GCGAATCAATGGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATG
TATAATAATTAATAATAAGAATTTTCATAAAAGCACTGGAATGACATCTCGGTCTGGTACAGATGTCGAT
GCAGCAAACCTCAGGGAAACATTCAGAAACTTGAAATATGAAGTCAGGAATAAAAATGATCTTACACGTG
AAGAAATTGTGGAATTGATGCGTGATGTTTCTAAAGAAGATCACAGCAAAAGGAGCAGTTTTGTTTGTGT
GCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACAAATGGACCTGTTGACCTGAAAAAAATAACA
AACTTTTTCAGAGGGGATCGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATTCAGGTTATTA
TTCTTGGCGAAATTCAAAGGATGGCTCCTGGTTCATCCAGTCGCTTTGTGCCATGCTGA

Translation (182 aa):
MENTENSVDSKSIKNLEPKIIHGSESMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVD
AANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKIT
NFFRGDRCRSLTGKPKLFIIQVIILGEIQRMAPGSSSRFVPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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