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Report for CCDS14602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14602.1 Public Homo sapiens X C1GALT1C1 24 110 108 CCDS HistoryNCBI Gene:29071Re-query CCDS DB by CCDS ID:14602.1Re-query CCDS DB by GeneID:29071See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304661.6 ENSP00000304364.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304661.6Link to Ensembl Protein Viewer:ENSP00000304364.5Re-query CCDS DB by Nucleotide ID:ENST00000304661Re-query CCDS DB by Protein ID:ENSP00000304364
Original member Current member EBI ENST00000371313.2 ENSP00000360363.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371313.2Link to Ensembl Protein Viewer:ENSP00000360363.2Re-query CCDS DB by Nucleotide ID:ENST00000371313Re-query CCDS DB by Protein ID:ENSP00000360363
Original member Current member NCBI NM_001011551.3 NP_001011551.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001011551.3Link to Protein Sequence:NP_001011551.1Re-query CCDS DB by Nucleotide ID:NM_001011551Re-query CCDS DB by Protein ID:NP_001011551Link to BLAST:NP_001011551.1
Original member Current member NCBI NM_152692.5 NP_689905.1 Accepted alive Link to Nucleotide Sequence:NM_152692.5Link to Protein Sequence:NP_689905.1Re-query CCDS DB by Nucleotide ID:NM_152692Re-query CCDS DB by Protein ID:NP_689905Link to BLAST:NP_689905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011551.1 318 Q96EU7 318 100% 0 0
NP_689905.1 318 Q96EU7 318 100% 0 0

Chromosomal Locations for CCDS 14602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120626210 120627166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGCTTTCTGAAAGCAGCTCCTTTTTGAAGGGTGTGATGCTTGGAAGCATTTTCTGTGCTTTGATCACTA
TGCTAGGACACATTAGGATTGGTCATGGAAATAGAATGCACCACCATGAGCATCATCACCTACAAGCTCC
TAACAAAGAAGATATCTTGAAAATTTCAGAGGATGAGCGCATGGAGCTCAGTAAGAGCTTTCGAGTATAC
TGTATTATCCTTGTAAAACCCAAAGATGTGAGTCTTTGGGCTGCAGTAAAGGAGACTTGGACCAAACACT
GTGACAAAGCAGAGTTCTTCAGTTCTGAAAATGTTAAAGTGTTTGAGTCAATTAATATGGACACAAATGA
CATGTGGTTAATGATGAGAAAAGCTTACAAATACGCCTTTGATAAGTATAGAGACCAATACAACTGGTTC
TTCCTTGCACGCCCCACTACGTTTGCTATCATTGAAAACCTAAAGTATTTTTTGTTAAAAAAGGATCCAT
CACAGCCTTTCTATCTAGGCCACACTATAAAATCTGGAGACCTTGAATATGTGGGTATGGAAGGAGGAAT
TGTCTTAAGTGTAGAATCAATGAAAAGACTTAACAGCCTTCTCAATATCCCAGAAAAGTGTCCTGAACAG
GGAGGGATGATTTGGAAGATATCTGAAGATAAACAGCTAGCAGTTTGCCTGAAATATGCTGGAGTATTTG
CAGAAAATGCAGAAGATGCTGATGGAAAAGATGTATTTAATACCAAATCTGTTGGGCTTTCTATTAAAGA
GGCAATGACTTATCACCCCAACCAGGTAGTAGAAGGCTGTTGTTCAGATATGGCTGTTACTTTTAATGGA
CTGACTCCAAATCAGATGCATGTGATGATGTATGGGGTATACCGCCTTAGGGCATTTGGGCATATTTTCA
ATGATGCATTGGTTTTCTTACCTCCAAATGGTTCTGACAATGACTGA

Translation (318 aa):
MLSESSSFLKGVMLGSIFCALITMLGHIRIGHGNRMHHHEHHHLQAPNKEDILKISEDERMELSKSFRVY
CIILVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMWLMMRKAYKYAFDKYRDQYNWF
FLARPTTFAIIENLKYFLLKKDPSQPFYLGHTIKSGDLEYVGMEGGIVLSVESMKRLNSLLNIPEKCPEQ
GGMIWKISEDKQLAVCLKYAGVFAENAEDADGKDVFNTKSVGLSIKEAMTYHPNQVVEGCCSDMAVTFNG
LTPNQMHVMMYGVYRLRAFGHIFNDALVFLPPNGSDND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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