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Report for CCDS43305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43305.1 Public Homo sapiens 5 RETREG1 24 110 108 CCDS HistoryNCBI Gene:54463Re-query CCDS DB by CCDS ID:43305.1Re-query CCDS DB by GeneID:54463See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399793.6 ENSP00000382691.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399793.6Link to Ensembl Protein Viewer:ENSP00000382691.2Re-query CCDS DB by Nucleotide ID:ENST00000399793Re-query CCDS DB by Protein ID:ENSP00000382691
Original member Current member NCBI NM_019000.5 NP_061873.2 Accepted alive Link to Nucleotide Sequence:NM_019000.5Link to Protein Sequence:NP_061873.2Re-query CCDS DB by Nucleotide ID:NM_019000Re-query CCDS DB by Protein ID:NP_061873Link to BLAST:NP_061873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061873.2 356 Q9H6L5-2 356 100% 0 0

Chromosomal Locations for CCDS 43305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 16474741 16475234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16477662 16477788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16478034 16478098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16478850 16478987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16481009 16481093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16483346 16483472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16508578 16508612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCCTGAAGGTGAAGACTTTGGACCAGGCAAAAGCTGGGAAGTTATCAATTCCAAACCAGATGAAAGAC
CCAGGCTCAGCCACTGTATTGCAGAATCATGGATGAATTTCAGCATATTTCTTCAAGAAATGTCTCTTTT
TAAACAGCAGAGCCCTGGCAAGTTTTGTCTCCTGGTCTGTAGTGTGTGCACATTTTTTACGATCTTGGGA
AGTTACATTCCTGGGGTTATACTCAGCTATCTACTGTTACTGTGTGCATTTTTGTGTCCATTGTTTAAAT
GTAATGATATTGGACAAAAAATTTACAGCAAAATTAAGTCAGTTCTGCTGAAACTGGATTTTGGAATTGG
AGAATATATTAATCAGAAGAAACGTGAGAGATCTGAAGCAGACAAAGAAAAAAGTCACAAAGATGACAGT
GAATTAGACTTTTCAGCTCTTTGTCCTAAGATTAGCCTCACGGTTGCTGCCAAAGAGTTATCTGTGTCTG
ACACAGACGTCTCAGAGGTATCCTGGACTGATAATGGGACCTTCAACCTTTCAGAAGGATACACTCCACA
GACAGACACTTCTGATGATCTTGACCGACCCAGTGAGGAAGTTTTCTCTAGAGATCTTTCAGATTTTCCA
TCTCTAGAAAATGGCATGGGAACAAATGATGAAGATGAATTAAGCCTTGGTTTGCCCACTGAGCTCAAGA
GAAAGAAGGAACAGTTGGACAGTGGTCACAGACCAAGCAAAGAGACGCAATCAGCAGCTGGTCTCACCCT
TCCTCTGAACAGTGACCAAACCTTTCACCTGATGAGCAACCTGGCTGGGGATGTTATCACAGCTGCAGTG
ACTGCAGCTATCAAAGACCAGTTAGAGGGTGTGCAGCAAGCACTTTCTCAGGCTGCCCCCATCCCAGAAG
AGGACACAGACACTGAAGAAGGTGATGACTTTGAACTACTTGACCAGTCAGAGCTGGATCAAATTGAGAG
TGAATTGGGACTTACACAAGACCAGGAAGCAGAAGCACAGCAAAATAAGAAGTCTTCAGGTTTCCTTTCA
AATCTGCTGGGAGGCCATTAA

Translation (356 aa):
MPEGEDFGPGKSWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTILG
SYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYINQKKRERSEADKEKSHKDDS
ELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFP
SLENGMGTNDEDELSLGLPTELKRKKEQLDSGHRPSKETQSAAGLTLPLNSDQTFHLMSNLAGDVITAAV
TAAIKDQLEGVQQALSQAAPIPEEDTDTEEGDDFELLDQSELDQIESELGLTQDQEAEAQQNKKSSGFLS
NLLGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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