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Report for CCDS12327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12327.1 Public Homo sapiens 19 EPHX3 24 110 108 CCDS HistoryNCBI Gene:79852Re-query CCDS DB by CCDS ID:12327.1Re-query CCDS DB by GeneID:79852See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12327.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221730.8 ENSP00000221730.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221730.8Link to Ensembl Protein Viewer:ENSP00000221730.2Re-query CCDS DB by Nucleotide ID:ENST00000221730Re-query CCDS DB by Protein ID:ENSP00000221730
Original member Current member EBI ENST00000435261.5 ENSP00000410323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435261.5Link to Ensembl Protein Viewer:ENSP00000410323.1Re-query CCDS DB by Nucleotide ID:ENST00000435261Re-query CCDS DB by Protein ID:ENSP00000410323
Original member Current member EBI ENST00000602233.5 ENSP00000469345.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000602233.5Link to Ensembl Protein Viewer:ENSP00000469345.1Re-query CCDS DB by Nucleotide ID:ENST00000602233Re-query CCDS DB by Protein ID:ENSP00000469345
Original member Current member NCBI NM_001142886.2 NP_001136358.1 Accepted alive Link to Nucleotide Sequence:NM_001142886.2Link to Protein Sequence:NP_001136358.1Re-query CCDS DB by Nucleotide ID:NM_001142886Re-query CCDS DB by Protein ID:NP_001136358Link to BLAST:NP_001136358.1
Original member Current member NCBI NM_024794.3 NP_079070.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024794.3Link to Protein Sequence:NP_079070.1Re-query CCDS DB by Nucleotide ID:NM_024794Re-query CCDS DB by Protein ID:NP_079070Link to BLAST:NP_079070.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136358.1 360 Q9H6B9 360 100% 0 0
NP_079070.1 360 Q9H6B9 360 100% 0 0

Chromosomal Locations for CCDS 12327.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 15227437 15227662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15227771 15227907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15227997 15228100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15230962 15231090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15231239 15231396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15231776 15231861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15231969 15232211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGCCGGAGCTGGTGGTGACCGCGCTGCTGGCGCCGTCGCGCCTGTCGCTGAAGCTGCTGCGCGCCTTCA
TGTGGAGCCTGGTGTTCTCGGTGGCGCTGGTGGCCGCGGCGGTCTACGGCTGCATAGCGCTCACGCACGT
GCTGTGCCGGCCCCGGCGCGGCTGCTGCGGGCGCCGTCGGAGCGCGTCCCCCGCCTGCCTGAGCGACCCC
TCGCTGGGTGAGCACGGTTTCCTGAACCTCAAGAGCTCGGGCCTGCGTCTGCACTATGTCTCGGCTGGAC
GAGGTAACGGACCCCTCATGCTGTTTCTGCACGGCTTCCCTGAGAACTGGTTCTCCTGGCGTTACCAGCT
CCGGGAGTTCCAGAGCCGCTTCCATGTTGTGGCTGTGGACTTGCGAGGCTATGGCCCCTCGGATGCACCT
CGGGATGTGGACTGCTACACAATCGACCTGCTGCTGGTGGACATCAAAGATGTCATCCTAGGCCTGGGTT
ACTCGAAGTGCATCCTTGTGGCCCATGACTGGGGTGCCCTCCTTGCCTGGCATTTCTCCATCTACTACCC
ATCCCTGGTCGAGCGGATGGTTGTGGTCAGTGGTGCCCCCATGTCGGTGTACCAAGACTATTCCCTGCAC
CACATCAGCCAGTTCTTCCGTTCCCACTACATGTTCCTGTTCCAGCTGCCCTGGCTGCCCGAGAAGCTGC
TGTCTATGTCTGACTTTCAGATTCTGAAGACCACCCTCACCCACCGCAAGACAGGCATCCCATGCTTGAC
CCCCAGCGAGCTCGAGGCCTTCCTTTATAACTTCTCACAGCCTGGTGGCCTCACTGGGCCCCTCAACTAC
TACCGAAACCTCTTCAGGAACTTCCCCCTGGAACCCCAGGAGCTGACCACACCCACATTGCTGCTGTGGG
GGGAGAAGGACACTTACTTGGAGCTGGGGCTGGTGGAAGCCATCGGCAGCCGCTTTGTGCCGGGCCGCTT
GGAGGCCCACATCCTGCCAGGCATAGGGCATTGGATCCCACAGAGCAACCCCCAGGAGATGCACCAGTAC
ATGTGGGCCTTCTTGCAAGACCTGCTGGACTAG

Translation (360 aa):
MPELVVTALLAPSRLSLKLLRAFMWSLVFSVALVAAAVYGCIALTHVLCRPRRGCCGRRRSASPACLSDP
SLGEHGFLNLKSSGLRLHYVSAGRGNGPLMLFLHGFPENWFSWRYQLREFQSRFHVVAVDLRGYGPSDAP
RDVDCYTIDLLLVDIKDVILGLGYSKCILVAHDWGALLAWHFSIYYPSLVERMVVVSGAPMSVYQDYSLH
HISQFFRSHYMFLFQLPWLPEKLLSMSDFQILKTTLTHRKTGIPCLTPSELEAFLYNFSQPGGLTGPLNY
YRNLFRNFPLEPQELTTPTLLLWGEKDTYLELGLVEAIGSRFVPGRLEAHILPGIGHWIPQSNPQEMHQY
MWAFLQDLLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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