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Report for CCDS12973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12973.1 Public Homo sapiens 19 ZNF544 24 110 108 CCDS HistoryNCBI Gene:27300Re-query CCDS DB by CCDS ID:12973.1Re-query CCDS DB by GeneID:27300See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12973.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269829.5 ENSP00000269829.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000269829.5Link to Ensembl Protein Viewer:ENSP00000269829.4Re-query CCDS DB by Nucleotide ID:ENST00000269829Re-query CCDS DB by Protein ID:ENSP00000269829
Original member Current member EBI ENST00000596652.5 ENSP00000469635.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000596652.5Link to Ensembl Protein Viewer:ENSP00000469635.1Re-query CCDS DB by Nucleotide ID:ENST00000596652Re-query CCDS DB by Protein ID:ENSP00000469635
Original member Current member EBI ENST00000687789.1 ENSP00000510489.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000687789.1Link to Ensembl Protein Viewer:ENSP00000510489.1Re-query CCDS DB by Nucleotide ID:ENST00000687789Re-query CCDS DB by Protein ID:ENSP00000510489
Original member Current member NCBI NM_001320767.2 NP_001307696.1 Accepted alive Link to Nucleotide Sequence:NM_001320767.2Link to Protein Sequence:NP_001307696.1Re-query CCDS DB by Nucleotide ID:NM_001320767Re-query CCDS DB by Protein ID:NP_001307696Link to BLAST:NP_001307696.1
Original member Current member NCBI NM_001320769.2 NP_001307698.1 Accepted alive Link to Nucleotide Sequence:NM_001320769.2Link to Protein Sequence:NP_001307698.1Re-query CCDS DB by Nucleotide ID:NM_001320769Re-query CCDS DB by Protein ID:NP_001307698Link to BLAST:NP_001307698.1
Original member Current member NCBI NM_001387390.1 NP_001374319.1 Accepted alive Link to Nucleotide Sequence:NM_001387390.1Link to Protein Sequence:NP_001374319.1Re-query CCDS DB by Nucleotide ID:NM_001387390Re-query CCDS DB by Protein ID:NP_001374319Link to BLAST:NP_001374319.1
Original member Current member NCBI NM_001387391.1 NP_001374320.1 Accepted alive Link to Nucleotide Sequence:NM_001387391.1Link to Protein Sequence:NP_001374320.1Re-query CCDS DB by Nucleotide ID:NM_001387391Re-query CCDS DB by Protein ID:NP_001374320Link to BLAST:NP_001374320.1
Original member Current member NCBI NM_001387392.1 NP_001374321.1 Accepted alive Link to Nucleotide Sequence:NM_001387392.1Link to Protein Sequence:NP_001374321.1Re-query CCDS DB by Nucleotide ID:NM_001387392Re-query CCDS DB by Protein ID:NP_001374321Link to BLAST:NP_001374321.1
Original member Current member NCBI NM_014480.4 NP_055295.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014480.4Link to Protein Sequence:NP_055295.2Re-query CCDS DB by Nucleotide ID:NM_014480Re-query CCDS DB by Protein ID:NP_055295Link to BLAST:NP_055295.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307696.1 715 Q6NX49 715 100% 0 0
NP_001307698.1 715 Q6NX49 715 100% 0 0
NP_001374319.1 715 Q6NX49 715 100% 0 0
NP_001374320.1 715 Q6NX49 715 100% 0 0
NP_001374321.1 715 Q6NX49 715 100% 0 0
NP_055295.2 715 Q6NX49 715 100% 0 0

Chromosomal Locations for CCDS 12973.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58244024 58244056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58246301 58246427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58246711 58246794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58260851 58262754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGGAAGCACGTTCTATGCTGGTTCCACCCCAGGCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCA
CACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTG
GGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAG
GACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAGACTGGAAAGCTACCCTTGAGGAGAATAGGTTGAATT
CTGAAAAAGATCGAGCTAGGGAAGAACTATCCCACCACGTGGAAGTGTACAGGAGTGGACCGGAGGAGCC
ACCCTCTTTGGTATTAGGAAAAGTGCAAGATCAGAGCAACCAGTTAAGGGAACACCAGGAGAACTCCTTG
AGGTTCATGGTACTCACCTCAGAGAGACTGTTTGCTCAAAGGGAACATTGTGAGCTTGAACTTGGGGGAG
GTTATTCTCTACCTTCTACTTTAAGCCTTCTACCTACAACATTACCTACAAGTACAGGTTTCCCTAAGCC
CAACTCACAAGTTAAAGAGTTGAAACAAAATTCAGCTTTCATTAATCATGAGAAAAATGGAGCAGATGGG
AAGCACTGTGAGAGTCATCAGTGTGCTAGAGCTTTCTGTCAGAGTATTTACTTGAGTAAACTTGGAAACG
TTGAAACAGGAAAGAAAAACCCTTATGAATATATTGTCAGTGGTGACTCTCTCAACTATGGTTCCTCCCT
TTGTTTTCATGGTAGAACTTTTTCAGTGAAGAAAAGTGATGACTGTAAGGATTATGGAAACCTCTTCAGT
CACAGTGTGTCTCTGAATGAACAGAAGCCAGTGCATTTTGGGAAAAGTCAGTATGAGTGTGATGAGTGCA
GGGAAACCTGTTCTGAGAGTCTGTGCCTTGTACAAACAGAAAGAAGTGGCCCTGGAGAGACCCCCTTCAG
ATGTGAGGAACGCTGTGCTGCCTTCCCCATGGCCTCATCTTTTTCTGACTGTAACATCATTCAGACTACA
GAGAAGCCATCTGTGTGTAATCAGTGTGGAAAATCTTTCAGCTGTTGTAAGCTCATACACCAGAGAACAC
ACACTGGAGAAAAGCCCTTCGAATGTACTCAGTGTGGGAAATCTTTTAGCCAGAGCTATGACCTTGTCAT
ACATCAGAGGACACACACTGGAGAGAAGCCCTATGAGTGTGACCTGTGTGGGAAATCCTTCACCCAGAGA
TCCAAACTTATTACACATCAGCGAATTCACACTGGAGAAAAACCGTATCAGTGTATTGAATGCAGAAAAT
CCTTCAGGTGGAACTCTAACCTCATTGTACATCAGAGAATTCATACTGGAGAGAAACCGTATGAGTGCAC
TCACTGTGGAAAGTCCTTCAGCCAAAGCTATGAGTTAGTTACACATAAAAGAACGCACACTGGAGAAAAA
CCCTTCAAATGTACTCAGTGTGGGAAATCTTTCAGCCAGAAGTATGACCTTGTTGTACATCAGAGGACAC
ACACTGGAGAGAAGCCCTATGAGTGCAACCTGTGTGGGAAATCCTTCTCCCAGAGTTCCAAACTTATTAC
GCATCAGCGAATTCACACTGGAGAAAAACCGTATCAGTGTATTGAATGTGGGAAATCCTTCAGATGGAAC
TCTAACCTCGTCATACATCAGAGAATTCATACTGGAGAGAAACCGTACGATTGCACTCACTGTGGAAAGT
CCTTCAGCCAAAGCTATCAGTTAGTTGCACATAAAAGAACTCACACTGGAGAAAAGCCCTATGAATGTAA
CGAGTGTGGAAAAGCCTTCAATCGAAGCACTCAGCTCATCAGGCATCTGCAAATTCACACTGGGGAGAAG
CCGTACAAATGCAATCAGTGCAATAAAGCCTTTGCAAGGAGCTCCTACCTTGTGATGCATCAGAGAACTC
ACACTGGTGAGAAACCTTTTGAGTGTAGTCAGTGTGGGAAAGCCTTTTCAGGGAGCTCTAACCTTCTTTC
CCATCACAGAATTCATTCTGGAGAGAAACCCTATGAATGTAGTGACTGTGGGAAATCCTTCCGGCAGCAA
TCTCAACTTGTAGTGCATCGGCGGACACATACTGGAGAGAAACCTTAG

Translation (715 aa):
MEARSMLVPPQASVCFEDVAMAFTQEEWEQLDLAQRTLYREVTLETWEHIVSLGLFLSKSDVISQLEQEE
DLCRAEQEAPRDWKATLEENRLNSEKDRAREELSHHVEVYRSGPEEPPSLVLGKVQDQSNQLREHQENSL
RFMVLTSERLFAQREHCELELGGGYSLPSTLSLLPTTLPTSTGFPKPNSQVKELKQNSAFINHEKNGADG
KHCESHQCARAFCQSIYLSKLGNVETGKKNPYEYIVSGDSLNYGSSLCFHGRTFSVKKSDDCKDYGNLFS
HSVSLNEQKPVHFGKSQYECDECRETCSESLCLVQTERSGPGETPFRCEERCAAFPMASSFSDCNIIQTT
EKPSVCNQCGKSFSCCKLIHQRTHTGEKPFECTQCGKSFSQSYDLVIHQRTHTGEKPYECDLCGKSFTQR
SKLITHQRIHTGEKPYQCIECRKSFRWNSNLIVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTGEK
PFKCTQCGKSFSQKYDLVVHQRTHTGEKPYECNLCGKSFSQSSKLITHQRIHTGEKPYQCIECGKSFRWN
SNLVIHQRIHTGEKPYDCTHCGKSFSQSYQLVAHKRTHTGEKPYECNECGKAFNRSTQLIRHLQIHTGEK
PYKCNQCNKAFARSSYLVMHQRTHTGEKPFECSQCGKAFSGSSNLLSHHRIHSGEKPYECSDCGKSFRQQ
SQLVVHRRTHTGEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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