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Report for CCDS55050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55050.1 Public Homo sapiens 6 TRAF3IP2 24 110 108 CCDS HistoryNCBI Gene:10758Re-query CCDS DB by CCDS ID:55050.1Re-query CCDS DB by GeneID:10758See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359831.8 ENSP00000352889.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359831.8Link to Ensembl Protein Viewer:ENSP00000352889.4Re-query CCDS DB by Nucleotide ID:ENST00000359831Re-query CCDS DB by Protein ID:ENSP00000352889
Original member Current member NCBI NM_001164281.3 NP_001157753.1 Accepted alive Link to Nucleotide Sequence:NM_001164281.3Link to Protein Sequence:NP_001157753.1Re-query CCDS DB by Nucleotide ID:NM_001164281Re-query CCDS DB by Protein ID:NP_001157753Link to BLAST:NP_001157753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157753.1 564 O43734-5 564 100% 0 0

Chromosomal Locations for CCDS 55050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 111559405 111559551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111562965 111563039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111566444 111566557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111567624 111567692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111572895 111572983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111575643 111575821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111580197 111580389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111591258 111592086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGAACCGAAGCATTCCTGTGGAGGTTGATGAATCAGAACCATACCCAAGTCAGTTGCTGAAACCAATCC
CAGAATATTCCCCGGAAGAGGAATCAGAACCACCTGCTCCAAATATAAGGAACATGGCACCCAACAGCTT
GTCTGCACCCACAATGCTTCACAATTCCTCCGGAGACTTTTCTCAAGCTCACTCAACCCTGAAACTTGCA
AATCACCAGCGGCCTGTATCCCGGCAGGTCACCTGCCTGCGCACTCAAGTTCTGGAGGACAGTGAAGACA
GTTTCTGCAGGAGACACCCAGGCCTGGGCAAAGCTTTCCCTTCTGGGTGCTCTGCAGTCAGCGAGCCTGC
GTCTGAGTCTGTGGTTGGAGCCCTCCCTGCAGAGCATCAGTTTTCATTTATGGAAAAACGTAATCAATGG
CTGGTATCTCAGCTTTCAGCGGCTTCTCCTGACACTGGCCATGACTCAGACAAATCAGACCAAAGTTTAC
CTAATGCCTCAGCAGACTCCTTGGGCGGTAGCCAGGAGATGGTGCAACGGCCCCAGCCTCACAGGAACCG
AGCAGGCCTGGATCTGCCAACCATAGACACGGGATATGATTCCCAGCCCCAGGATGTCCTGGGCATCAGG
CAGCTGGAAAGGCCCCTGCCCCTCACCTCCGTGTGTTACCCCCAGGACCTCCCCAGACCTCTCAGGTCCA
GGGAGTTCCCTCAGTTTGAACCTCAGAGGTATCCAGCATGTGCACAGATGCTGCCTCCCAATCTTTCCCC
ACATGCTCCATGGAACTATCATTACCATTGTCCTGGAAGTCCCGATCACCAGGTGCCATATGGCCATGAC
TACCCTCGAGCAGCCTACCAGCAAGTGATCCAGCCGGCTCTGCCTGGGCAGCCCCTGCCTGGAGCCAGTG
TGAGAGGCCTGCACCCTGTGCAGAAGGTTATCCTGAATTATCCCAGCCCCTGGGACCACGAAGAGAGGCC
CGCACAGAGAGACTGCTCCTTTCCGGGGCTTCCAAGGCACCAGGACCAGCCACATCACCAGCCACCTAAT
AGAGCTGGTGCTCCTGGGGAGTCCTTGGAGTGCCCTGCAGAGCTGAGACCACAGGTTCCCCAGCCTCCGT
CCCCAGCTGCTGTGCCTAGACCCCCTAGCAACCCTCCAGCCAGAGGAACTCTAAAAACAAGCAATTTGCC
AGAAGAATTGCGGAAAGTCTTTATCACTTATTCGATGGACACAGCTATGGAGGTGGTGAAATTCGTGAAC
TTTTTGTTGGTAAATGGCTTCCAAACTGCAATTGACATATTTGAGGATAGAATCCGAGGCATTGATATCA
TTAAATGGATGGAGCGCTACCTTAGGGATACCGTGATGATAATCGTAGCAATCAGCCCCAAATACAAACA
GGACGTGGAAGGCGCTGAGTCGCAGCTGGACGAGGATGAGCATGGCTTACATACTAAGTACATTCATCGA
ATGATGCAGATTGAGTTCATAAAACAAGGAAGCATGAATTTCAGATTCATCCCTGTGCTCTTCCCAAATG
CTAAGAAGGAGCATGTGCCCACCTGGCTTCAGAACACTCATGTCTACAGCTGGCCCAAGAATAAAAAAAA
CATCCTGCTGCGGCTGCTGAGAGAGGAAGAGTATGTGGCTCCTCCACGGGGGCCTCTGCCCACCCTTCAG
GTGGTTCCCTTGTGA

Translation (564 aa):
MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDFSQAHSTLKLA
NHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASESVVGALPAEHQFSFMEKRNQW
LVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIR
QLERPLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHD
YPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDHEERPAQRDCSFPGLPRHQDQPHHQPPN
RAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDTAMEVVKFVN
FLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDTVMIIVAISPKYKQDVEGAESQLDEDEHGLHTKYIHR
MMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVAPPRGPLPTLQ
VVPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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