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Report for CCDS10281.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
10281.1 |
Public |
Homo sapiens |
15 |
SNUPN |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10073](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:10281.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:10073](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 10281.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000308588.10 |
ENSP00000309831.5 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000308588.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000309831.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000308588](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000309831](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000564644.5 |
ENSP00000454852.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000564644.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000454852.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000564644](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000454852](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000567134.5 |
ENSP00000456224.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000567134.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000456224.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000567134](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000456224](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000564675.5 |
ENSP00000458053.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000564675.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000458053.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000564675](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000458053](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042581.2 |
NP_001036046.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042581.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001036046.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042581](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001036046](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001036046.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042588.2 |
NP_001036053.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042588.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001036053.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042588](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001036053](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001036053.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_005701.4 |
NP_005692.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_005701.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_005692.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_005701](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_005692](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_005692.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 10281.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1083 nt): ATGGAAGAGTTGAGTCAGGCCCTGGCTAGTAGCTTTTCTGTGTCTCAAGATCTGAACAGCACAGCTGCCC CACACCCCCGCCTATCCCAGTACAAGTCCAAGTACAGTTCCTTGGAGCAGAGTGAGCGCCGCCGGAGGTT ACTGGAACTGCAGAAATCCAAGCGGCTGGATTATGTGAACCATGCCAGAAGACTGGCTGAAGATGACTGG ACAGGGATGGAGAGTGAGGAAGAAAATAAGAAAGATGATGAAGAAATGGACATTGACACTGTCAAGAAGT TACCAAAACACTATGCTAATCAATTGATGCTTTCTGAGTGGTTAATTGACGTTCCTTCAGATTTGGGGCA GGAATGGATTGTGGTCGTGTGCCCTGTTGGAAAAAGAGCCCTTATCGTGGCCTCCAGGGGTTCTACCAGT GCCTACACCAAGAGTGGCTACTGTGTCAACAGGTTTTCTTCACTTCTGCCAGGAGGCAACAGGCGAAACT CAACAGCAAAAGACTACACCATTCTAGATTGCATTTACAATGAGGTAAACCAGACCTACTACGTTCTGGA TGTGATGTGCTGGCGGGGACACCCTTTTTATGATTGCCAGACTGATTTCCGATTCTACTGGATGCATTCA AAGTTACCAGAAGAAGAAGGACTGGGAGAGAAAACCAAGCTTAATCCTTTTAAATTTGTGGGGCTAAAGA ACTTCCCTTGCACTCCCGAAAGCCTGTGTGATGTGCTATCTATGGATTTCCCTTTTGAGGTAGATGGACT TCTCTTCTACCACAAACAGACCCACTACAGCCCCGGAAGCACTCCCTTGGTGGGCTGGCTGCGCCCCTAC ATGGTGTCAGATGTCCTTGGTGTAGCTGTGCCGGCTGGCCCGCTGACCACCAAGCCAGACTATGCTGGGC ACCAGCTCCAGCAGATTATGGAGCACAAGAAGAGCCAGAAGGAAGGCATGAAGGAGAAACTCACACACAA GGCCTCTGAGAATGGGCACTATGAATTGGAGCACCTGTCTACTCCCAAGTTGAAGGGTTCTTCCCATAGC CCAGACCACCCTGGATGCCTCATGGAGAATTAA
Translation (360 aa): MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDW TGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTS AYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHS KLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPY MVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHS PDHPGCLMEN
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