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Report for CCDS55368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55368.1 Public Homo sapiens X PNPLA4 24 110 108 CCDS HistoryNCBI Gene:8228Re-query CCDS DB by CCDS ID:55368.1Re-query CCDS DB by GeneID:8228See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55368.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537427.5 ENSP00000443157.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537427.5Link to Ensembl Protein Viewer:ENSP00000443157.1Re-query CCDS DB by Nucleotide ID:ENST00000537427Re-query CCDS DB by Protein ID:ENSP00000443157
Original member Current member NCBI NM_001172672.2 NP_001166143.1 Accepted alive Link to Nucleotide Sequence:NM_001172672.2Link to Protein Sequence:NP_001166143.1Re-query CCDS DB by Nucleotide ID:NM_001172672Re-query CCDS DB by Protein ID:NP_001166143Link to BLAST:NP_001166143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166143.1 166 P41247-2 166 100% 0 0

Chromosomal Locations for CCDS 55368.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7900686 7900817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7901989 7902141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7912028 7912093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7921713 7921848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7922004 7922017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGCCCGACTAAGAAGTGGGATGGAGTCGATTCTTCCTCCCAGCGCTCACGAGCTGGCCCAGAACCGAC
TGCACGTATCCATCACCAACGCCAAAACCAGAGAAAATCACTTAGTCTCCACTTTTTCCTCCAGGGAGGA
CCTCATTAAGGTCCTCCTAGCCAGCAGTTTTGTGCCCATTTATGCAGGACTGAAGCTAGTGGAATACAAA
GGGCAGAAGTGGGTGGACGGAGGCCTCACCAACGCTCTTCCCATCCTGCCCGTCGGCCGGACAGTAACCA
TCTCCCCCTTCAGTGGACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGTTAATAT
CGCCAAGCAGGATATCATGTTGTCCCTGGCAAACCTGGTGAGACTCAACCAAGCCCTTTTTCCCCCAAGC
AAGAGGAAAATGGAATCTTTGTATCAGTGTGGTTTTGATGACACTGTTAAGTTTTTACTTAAAGAAAATT
GGTTTGAATAA

Translation (166 aa):
MARLRSGMESILPPSAHELAQNRLHVSITNAKTRENHLVSTFSSREDLIKVLLASSFVPIYAGLKLVEYK
GQKWVDGGLTNALPILPVGRTVTISPFSGRLDISPQDKGQLDLYVNIAKQDIMLSLANLVRLNQALFPPS
KRKMESLYQCGFDDTVKFLLKENWFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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