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Report for CCDS53796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53796.1 Public Homo sapiens 12 MFSD5 24 110 108 CCDS HistoryNCBI Gene:84975Re-query CCDS DB by CCDS ID:53796.1Re-query CCDS DB by GeneID:84975See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53796.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534842.1 ENSP00000442688.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534842.1Link to Ensembl Protein Viewer:ENSP00000442688.1Re-query CCDS DB by Nucleotide ID:ENST00000534842Re-query CCDS DB by Protein ID:ENSP00000442688
Original member Current member NCBI NM_001170790.2 NP_001164261.1 Accepted alive Link to Nucleotide Sequence:NM_001170790.2Link to Protein Sequence:NP_001164261.1Re-query CCDS DB by Nucleotide ID:NM_001170790Re-query CCDS DB by Protein ID:NP_001164261Link to BLAST:NP_001164261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164261.1 557 Q6N075-2 557 100% 0 0

Chromosomal Locations for CCDS 53796.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53251733 53252035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53252818 53254188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGAGGTCACTGCAGTGGGAGAGGAGGCAAACCAAGGAGACCTTCTCGGCTTCGGGCAGCGGTGCTGTT
CCTTAGGAAGCTCCAACCCTTGGCTCTACCGGACTGCGGGCATCTTTCCCGAGCACTGCACGGAAGAAAA
GAAAATTGGCACTTATTTCAGGGTGGCCCCTCAGGCATCCAAGAGCCAGAGGAGCAGGTGTCACGGGATG
GCAGCGAGCGAGGCCAGGCCAGGAGAAGCAACCGCAGCCTCCTATGGTCGCCCCTTCCCGACCCACCCCA
GGCGTCAGGAGTTCCGCGCCCGGGTCGTCCGGGGGCCCACCATGCTGGTGACTGCCTACCTTGCTTTTGT
AGGCCTCCTGGCCTCCTGCCTGGGGCTGGAACTGTCAAGATGCCGGGCTAAACCCCCTGGAAGGGCCTGC
AGCAATCCCTCCTTCCTTCGGTTTCAACTGGACTTCTATCAGGTCTACTTCCTGGCCCTGGCAGCTGATT
GGCTTCAGGCCCCCTACCTCTATAAACTCTACCAGCATTACTACTTCCTGGAAGGTCAAATTGCCATCCT
CTATGTCTGTGGCCTTGCCTCTACAGTCCTCTTTGGCCTAGTGGCCTCCTCCCTTGTGGATTGGCTGGGT
CGCAAGAATTCTTGTGTCCTCTTCTCCCTGACTTACTCACTATGCTGCTTAACCAAACTCTCTCAAGACT
ACTTTGTGCTGCTAGTGGGGCGAGCACTTGGTGGGCTGTCCACAGCCCTGCTCTTCTCAGCCTTCGAGGC
CTGGTATATCCATGAGCACGTGGAACGGCATGACTTCCCTGCTGAGTGGATCCCAGCTACCTTTGCTCGA
GCTGCCTTCTGGAACCATGTGCTGGCTGTAGTGGCAGGTGTGGCAGCTGAGGCTGTAGCCAGCTGGATAG
GGCTGGGGCCTGTAGCGCCCTTTGTGGCTGCCATCCCTCTCCTGGCTCTGGCAGGGGCCTTGGCCCTTCG
AAACTGGGGGGAGAACTATGACCGGCAGCGTGCCTTCTCAAGGACCTGTGCTGGAGGCCTGCGCTGCCTC
CTGTCGGACCGCCGCGTGCTGCTGTTGGGCACCATACAAGCTCTATTTGAGAGTGTCATCTTCATCTTTG
TCTTCCTCTGGACACCTGTGCTGGACCCACACGGGGCCCCTCTGGGCATTATCTTCTCCAGCTTCATGGC
AGCCAGCCTGCTTGGCTCTTCCCTGTACCGTATCGCCACCTCCAAGAGGTACCACCTTCAGCCCATGCAC
CTGCTGTCCCTTGCTGTGCTCATCGTCGTCTTCTCTCTCTTCATGTTGACTTTCTCTACCAGCCCAGGCC
AGGAGAGTCCGGTGGAGTCCTTCATAGCCTTTCTACTTATTGAGTTGGCTTGTGGATTATACTTTCCCAG
CATGAGCTTCCTACGGAGAAAGGTGATCCCTGAGACAGAGCAGGCTGGTGTACTCAACTGGTTCCGGGTA
CCTCTGCACTCACTGGCTTGCCTAGGGCTCCTTGTCCTCCATGACAGTGATCGAAAAACAGGCACTCGGA
ATATGTTCAGCATTTGCTCTGCTGTCATGGTGATGGCTCTGCTGGCAGTGGTGGGACTCTTCACCGTGGT
AAGGCATGATGCTGAGCTGCGGGTACCTTCACCTACTGAGGAGCCCTATGCCCCTGAGCTGTAA

Translation (557 aa):
MEVTAVGEEANQGDLLGFGQRCCSLGSSNPWLYRTAGIFPEHCTEEKKIGTYFRVAPQASKSQRSRCHGM
AASEARPGEATAASYGRPFPTHPRRQEFRARVVRGPTMLVTAYLAFVGLLASCLGLELSRCRAKPPGRAC
SNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLG
RKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFAR
AAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAGGLRCL
LSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYHLQPMH
LLSLAVLIVVFSLFMLTFSTSPGQESPVESFIAFLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRV
PLHSLACLGLLVLHDSDRKTGTRNMFSICSAVMVMALLAVVGLFTVVRHDAELRVPSPTEEPYAPEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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