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Report for CCDS30656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30656.1 Public Homo sapiens 1 SMPDL3B 24 110 108 CCDS HistoryNCBI Gene:27293Re-query CCDS DB by CCDS ID:30656.1Re-query CCDS DB by GeneID:27293See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30656.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373888.8 ENSP00000362995.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373888.8Link to Ensembl Protein Viewer:ENSP00000362995.4Re-query CCDS DB by Nucleotide ID:ENST00000373888Re-query CCDS DB by Protein ID:ENSP00000362995
Original member Current member NCBI NM_001009568.3 NP_001009568.1 Accepted alive Link to Nucleotide Sequence:NM_001009568.3Link to Protein Sequence:NP_001009568.1Re-query CCDS DB by Nucleotide ID:NM_001009568Re-query CCDS DB by Protein ID:NP_001009568Link to BLAST:NP_001009568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009568.1 373 Q92485-2 373 100% 0 0

Chromosomal Locations for CCDS 30656.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27935184 27935244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27945232 27945445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27949065 27949162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27953215 27953358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27954354 27954526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27955684 27955864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27955949 27956199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGAGGCTGCTCGCCTGGCTGATTTTCCTGGCTAACTGGGGAGGTGCCAGGGCTGAACCAGGGAAGTTCT
GGCACATCGCTGACCTGCACCTTGACCCTGACTACAAGGTATCCAAAGACCCCTTCCAGGTGTGCCCATC
AGCTGGATCCCAGCCAGTGCCCGACGCAGGCCCCTGGGGTGACTACCTCTGTGATTCTCCCTGGGCCCTC
ATCAACTCCTCCATCTATGCCATGAAGGAGATTGAGCCAGAGCCAGACTTCATTCTCTGGACTGGTGATG
ACACGCCTCATGTGCCCGATGAGAAACTGGGAGAGGCAGCTGTACTGGAAATTGTGGAACGCCTGACCAA
GCTCATCAGAGAGGTCTTTCCAGATACTAAAGTCTATGCTGCTTTGGGAAATCATGATTTTCACCCCAAA
AACCAGTTCCCAGCTGGAAGTAACAACATCTACAATCAGATAGCAGAACTATGGAAACCCTGGCTTAGTA
ATGAGTCCATCGCTCTCTTCAAAAAAGGTGCCTTCTACTGTGAGAAGCTGCCGGGTCCCAGCGGGGCTGG
GCGAATTGTGGTCCTCAACACCAATCTGTACTATACCAGCAATGCGCTGACAGCAGACATGGCGGACCCT
GGCCAGCAGTTCCAGTGGCTGGAAGATGTGCTGACCGATGCATCCAAAGCTGGGGACATGGTGTACATTG
TCGGCCACGTGCCCCCGGGGTTCTTTGAGAAGACGCAAAACAAGGCATGGTTCCGGGAGGGCTTCAATGA
AAAATACCTGAAGGTGGTCCGGAAGCATCATCGCGTCATAGCAGGGCAGTTCTTCGGGCACCACCACACC
GACAGCTTTCGGATGCTCTATGATGATGCAGGTGTCCCCATAAGCGCCATGTTCATCACACCTGGAGTCA
CCCCATGGAAAACCACATTACCTGGAGTGGTCAATGGGGCCAACAATCCAGCCATCCGGGTGTTCGAATA
TGACCGAGCCACACTGAGCCTGAAGGTCAGGAGTCCTGCGGAGGCCAGAGGAGGAGGGTGGGAGGGGCTT
AAATGCATCACCACCTTCCCTCACTCTCAGCTTATCCACCTTCCCCTGACCACTGAGCCTCAGGAAGGTT
GA

Translation (373 aa):
MRLLAWLIFLANWGGARAEPGKFWHIADLHLDPDYKVSKDPFQVCPSAGSQPVPDAGPWGDYLCDSPWAL
INSSIYAMKEIEPEPDFILWTGDDTPHVPDEKLGEAAVLEIVERLTKLIREVFPDTKVYAALGNHDFHPK
NQFPAGSNNIYNQIAELWKPWLSNESIALFKKGAFYCEKLPGPSGAGRIVVLNTNLYYTSNALTADMADP
GQQFQWLEDVLTDASKAGDMVYIVGHVPPGFFEKTQNKAWFREGFNEKYLKVVRKHHRVIAGQFFGHHHT
DSFRMLYDDAGVPISAMFITPGVTPWKTTLPGVVNGANNPAIRVFEYDRATLSLKVRSPAEARGGGWEGL
KCITTFPHSQLIHLPLTTEPQEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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