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Report for CCDS41358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41358.1 Public Homo sapiens 1 DPH5 24 110 108 CCDS HistoryNCBI Gene:51611Re-query CCDS DB by CCDS ID:41358.1Re-query CCDS DB by GeneID:51611See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41358.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370109.8 ENSP00000359127.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370109.8Link to Ensembl Protein Viewer:ENSP00000359127.3Re-query CCDS DB by Nucleotide ID:ENST00000370109Re-query CCDS DB by Protein ID:ENSP00000359127
Original member Current member EBI ENST00000427040.3 ENSP00000394364.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427040.3Link to Ensembl Protein Viewer:ENSP00000394364.3Re-query CCDS DB by Nucleotide ID:ENST00000427040Re-query CCDS DB by Protein ID:ENSP00000394364
Original member Current member EBI ENST00000488176.1 ENSP00000418282.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000488176.1Link to Ensembl Protein Viewer:ENSP00000418282.1Re-query CCDS DB by Nucleotide ID:ENST00000488176Re-query CCDS DB by Protein ID:ENSP00000418282
Original member Current member NCBI NM_001077394.2 NP_001070862.1 Accepted alive Link to Nucleotide Sequence:NM_001077394.2Link to Protein Sequence:NP_001070862.1Re-query CCDS DB by Nucleotide ID:NM_001077394Re-query CCDS DB by Protein ID:NP_001070862Link to BLAST:NP_001070862.1
Original member Current member NCBI NM_015958.3 NP_057042.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015958.3Link to Protein Sequence:NP_057042.2Re-query CCDS DB by Nucleotide ID:NM_015958Re-query CCDS DB by Protein ID:NP_057042Link to BLAST:NP_057042.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070862.1 285 Q9H2P9-1 285 100% 0 0
NP_057042.2 285 Q9H2P9-1 285 100% 0 0

Chromosomal Locations for CCDS 41358.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 100990408 100990631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100992637 100992740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100995110 100995149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 101001467 101001587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 101013710 101013818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 101021641 101021765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 101025309 101025443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGCTTTATCTCATCGGGTTGGGCCTGGGAGATGCCAAGGACATCACAGTCAAGGGCCTGGAAGTTGTTA
GACGCTGCAGTCGAGTGTATCTGGAAGCCTACACCTCAGTCCTAACTGTAGGGAAGGAAGCCTTGGAAGA
GTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAG
GATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGGGGCCACAACACACAGTGATC
TTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCTGT
AGGCTGCTGTGGTTTACAGTTATATAAGTTTGGAGAGACAGTTTCTATTGTTTTTTGGACAGACACTTGG
AGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACAAAATGGCATGCACACATTATGTTTACTAG
ACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAGGGAAGGAAGATCTATGAACCTCCACGGTA
TATGAGTGTAAACCAAGCAGCCCAGCAGCTTCTGGAGATTGTTCAAAATCAAAGAATACGAGGAGAAGAA
CCAGCAGTTACCGAGGAGACACTTTGTGTTGGCTTAGCCAGGGTTGGAGCCGACGACCAGAAAATTGCAG
CAGGCACTTTAAGGCAAATGTGCACTGTGGACTTGGGAGAACCATTGCATTCCTTGATCATCACAGGAGG
CAGCATACATCCAATGGAGATGGAGATGCTAAGTCTGTTTTCCATACCAGAAAATAGCTCAGAATCTCAA
AGCATCAATGGACTTTGA

Translation (285 aa):
MLYLIGLGLGDAKDITVKGLEVVRRCSRVYLEAYTSVLTVGKEALEEFYGRKLVVADREEVEQEADNILK
DADISDVAFLVVGDPFGATTHSDLVLRATKLGIPYRVIHNASIMNAVGCCGLQLYKFGETVSIVFWTDTW
RPESFFDKVKKNRQNGMHTLCLLDIKVKEQSLENLIKGRKIYEPPRYMSVNQAAQQLLEIVQNQRIRGEE
PAVTEETLCVGLARVGADDQKIAAGTLRQMCTVDLGEPLHSLIITGGSIHPMEMEMLSLFSIPENSSESQ
SINGL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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