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Report for CCDS1555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1555.1 Public Homo sapiens 1 ITPKB 24 110 108 CCDS HistoryNCBI Gene:3707Re-query CCDS DB by CCDS ID:1555.1Re-query CCDS DB by GeneID:3707See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272117.8 ENSP00000272117.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000272117.8Link to Ensembl Protein Viewer:ENSP00000272117.3Re-query CCDS DB by Nucleotide ID:ENST00000272117Re-query CCDS DB by Protein ID:ENSP00000272117
Original member Current member EBI ENST00000429204.6 ENSP00000411152.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429204.6Link to Ensembl Protein Viewer:ENSP00000411152.1Re-query CCDS DB by Nucleotide ID:ENST00000429204Re-query CCDS DB by Protein ID:ENSP00000411152
Original member Current member NCBI NM_002221.4 NP_002212.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002221.4Link to Protein Sequence:NP_002212.3Re-query CCDS DB by Nucleotide ID:NM_002221Re-query CCDS DB by Protein ID:NP_002212Link to BLAST:NP_002212.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002212.3 946 P27987-1 946 100% 0 0

Chromosomal Locations for CCDS 1555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 226634671 226634886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226637679 226637750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226639557 226639658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226641921 226642125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226647167 226647380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226648672 226648771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226735527 226737458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2841 nt):
ATGGCTGTGTACTGCTATGCGCTCAATAGCCTGGTGATCATGAATAGCGCCAACGAGATGAAGAGCGGCG
GCGGCCCGGGGCCCAGTGGCAGCGAGACGCCCCCGCCCCCGAGGAGGGCAGTGCTGAGCCCCGGCAGCGT
TTTCAGCCCCGGGAGAGGCGCCTCTTTCCTCTTCCCCCCAGCCGAGTCGCTGTCCCCCGAGGAGCCCCGG
AGCCCCGGGGGCTGGCGGAGCGGCCGGCGCAGGCTGAATAGTAGCAGCGGCAGTGGCAGCGGCAGCAGCG
GCAGTAGCGTGAGCAGCCCAAGTTGGGCTGGTCGCCTGCGAGGGGACCGGCAGCAGGTGGTGGCAGCCGG
TACCCTCTCCCCGCCAGGGCCGGAGGAGGCCAAGAGGAAGCTGCGGATCTTGCAGCGCGAGTTGCAGAAC
GTGCAGGTGAACCAGAAAGTGGGCATGTTTGAGGCGCACATCCAGGCACAGAGCTCCGCCATTCAAGCGC
CCCGCAGCCCGCGTTTGGGCAGGGCTCGCTCGCCCTCCCCGTGCCCCTTCCGCAGCAGCAGTCAGCCCCC
TGGAAGGGTCCTGGTTCAGGGCGCCCGGAGCGAGGAACGGAGGACAAAGTCCTGGGGGGAGCAATGTCCA
GAGACTTCAGGAACCGACTCCGGGAGGAAAGGAGGGCCCAGCCTATGCTCCTCGCAGGTGAAGAAAGGAA
TGCCACCTCTTCCCGGCCGGGCTGCCCCTACAGGATCAGAGGCTCAGGGTCCATCCGCTTTTGTAAGGAT
GGAGAAGGGTATCCCTGCCAGTCCCCGCTGTGGCTCACCCACAGCTATGGAAATTGACAAAAGGGGCTCT
CCTACCCCGGGAACTCGGAGCTGCCTAGCTCCCTCATTGGGGCTGTTCGGAGCTAGCTTAACGATGGCCA
CGGAAGTGGCAGCGAGAGTTACATCCACTGGGCCACACCGTCCACAGGATCTTGCCCTCACTGAGCCGTC
TGGGAGAGCCCGTGAGCTTGAGGACCTGCAGCCCCCAGAGGCCCTGGTGGAGAGGCAGGGGCAGTTTCTG
GGCAGTGAGACAAGCCCAGCCCCAGAAAGGGGCGGGCCCCGCGATGGAGAACCCCCTGGGAAGATGGGGA
AAGGATATCTGCCCTGTGGCATGCCGGGCTCTGGGGAGCCTGAAGTGGGCAAAAGGCCAGAGGAGACGAC
TGTGAGCGTGCAAAGCGCAGAGTCCTCTGATTCCCTGAGCTGGTCCAGGCTGCCCAGGGCCCTGGCCTCC
GTAGGCCCTGAGGAGGCCCGAAGTGGGGCCCCCGTGGGCGGGGGGCGTTGGCAGCTCTCCGACAGAGTGG
AGGGAGGGTCCCCAACGCTGGGCTTGCTTGGGGGCAGCCCCTCAGCACAGCCGGGGACCGGGAATGTGGA
GGCGGGAATTCCTTCTGGCAGAATGCTGGAGCCTTTGCCCTGTTGGGACGCTGCGAAAGATCTGAAAGAA
CCTCAGTGCCCTCCTGGGGACAGGGTGGGTGTGCAGCCTGGGAACTCCAGGGTTTGGCAGGGCACCATGG
AGAAAGCCGGTTTGGCTTGGACGCGTGGCACAGGGGTGCAATCAGAGGGGACTTGGGAAAGCCAGCGGCA
GGACAGTGATGCCCTCCCAAGTCCGGAGCTGCTACCCCAAGATCCGGACAAGCCTTTCCTGAGGAAGGCC
TGCAGCCCCAGCAACATACCTGCTGTCATCATTACAGACATGGGCACCCAGGAGGATGGGGCCTTGGAGG
AGACGCAGGGAAGCCCTCGGGGCAACCTGCCCCTGAGGAAACTGTCCTCTTCCTCGGCCTCCTCCACGGG
CTTCTCCTCATCCTACGAAGACTCAGAGGAGGACATCTCCAGTGACCCTGAGCGCACCCTGGACCCCAAC
TCAGCCTTCCTGCATACCCTGGACCAGCAGAAACCTAGAGTGAGCAAATCATGGAGGAAGATAAAAAACA
TGGTGCACTGGTCTCCCTTCGTCATGTCCTTCAAGAAGAAGTACCCCTGGATCCAGCTGGCAGGACACGC
AGGGAGTTTCAAGGCAGCTGCCAATGGCAGGATCCTGAAGAAGCACTGTGAGTCAGAGCAGCGCTGCCTG
GACCGGCTGATGGTGGATGTGCTGAGGCCCTTCGTACCTGCCTACCATGGGGATGTGGTGAAGGACGGGG
AGCGCTACAACCAGATGGACGACCTGCTGGCCGACTTCGACTCGCCCTGTGTGATGGACTGCAAGATGGG
AATCAGGACCTACCTGGAGGAGGAGCTCACGAAGGCCCGGAAGAAGCCCAGCCTGCGGAAGGACATGTAC
CAGAAGATGATCGAGGTGGACCCCGAGGCCCCCACCGAGGAGGAAAAAGCACAGCGGGCTGTGACCAAGC
CACGGTACATGCAGTGGCGGGAGACCATCAGCTCCACGGCCACCCTGGGGTTCAGGATCGAGGGAATCAA
GAAAGAAGACGGCACCGTGAACCGGGACTTCAAGAAGACCAAAACGAGGGAGCAGGTCACCGAGGCCTTC
AGAGAGTTCACTAAAGGAAACCATAACATCCTGATCGCCTATCGGGACCGGCTGAAGGCCATTCGAACCA
CTCTAGAAGTTTCTCCCTTCTTCAAGTGCCACGAGGTCATTGGCAGCTCCCTCCTCTTCATCCACGACAA
GAAGGAACAGGCCAAAGTGTGGATGATCGACTTTGGGAAAACCACGCCCCTGCCTGAGGGCCAGACCCTG
CAGCATGACGTCCCCTGGCAGGAGGGGAACCGGGAGGATGGCTACCTCTCGGGGCTCAATAACCTCGTCG
ACATCCTGACCGAGATGTCCCAGGATGCCCCACTCGCCTGA

Translation (946 aa):
MAVYCYALNSLVIMNSANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPR
SPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQN
VQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCP
ETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGS
PTPGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFL
GSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALAS
VGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKE
PQCPPGDRVGVQPGNSRVWQGTMEKAGLAWTRGTGVQSEGTWESQRQDSDALPSPELLPQDPDKPFLRKA
CSPSNIPAVIITDMGTQEDGALEETQGSPRGNLPLRKLSSSSASSTGFSSSYEDSEEDISSDPERTLDPN
SAFLHTLDQQKPRVSKSWRKIKNMVHWSPFVMSFKKKYPWIQLAGHAGSFKAAANGRILKKHCESEQRCL
DRLMVDVLRPFVPAYHGDVVKDGERYNQMDDLLADFDSPCVMDCKMGIRTYLEEELTKARKKPSLRKDMY
QKMIEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGTVNRDFKKTKTREQVTEAF
REFTKGNHNILIAYRDRLKAIRTTLEVSPFFKCHEVIGSSLLFIHDKKEQAKVWMIDFGKTTPLPEGQTL
QHDVPWQEGNREDGYLSGLNNLVDILTEMSQDAPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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