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Report for CCDS61089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61089.1 Public Homo sapiens 12 AMN1 24 110 108 CCDS HistoryNCBI Gene:196394Re-query CCDS DB by CCDS ID:61089.1Re-query CCDS DB by GeneID:196394See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536761.5 ENSP00000440967.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536761.5Link to Ensembl Protein Viewer:ENSP00000440967.1Re-query CCDS DB by Nucleotide ID:ENST00000536761Re-query CCDS DB by Protein ID:ENSP00000440967
Original member Current member EBI ENST00000537562.5 ENSP00000441419.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537562.5Link to Ensembl Protein Viewer:ENSP00000441419.1Re-query CCDS DB by Nucleotide ID:ENST00000537562Re-query CCDS DB by Protein ID:ENSP00000441419
Original member Current member NCBI NM_001278411.2 NP_001265340.1 Accepted alive Link to Nucleotide Sequence:NM_001278411.2Link to Protein Sequence:NP_001265340.1Re-query CCDS DB by Nucleotide ID:NM_001278411Re-query CCDS DB by Protein ID:NP_001265340Link to BLAST:NP_001265340.1
Original member Current member NCBI NM_001278412.2 NP_001265341.1 Accepted alive Link to Nucleotide Sequence:NM_001278412.2Link to Protein Sequence:NP_001265341.1Re-query CCDS DB by Nucleotide ID:NM_001278412Re-query CCDS DB by Protein ID:NP_001265341Link to BLAST:NP_001265341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265340.1 240 Q8IY45-2 240 100% 0 0
NP_001265341.1 240 Q8IY45-2 240 100% 0 0

Chromosomal Locations for CCDS 61089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31672304 31672377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31689007 31689118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31697361 31697417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31697740 31697957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31701863 31702007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31709293 31709409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGAAGAATATTTCCAGATATCTCACAGACATTAAGCCTTTGCCTCCCAACATAAAAGACAGACTGATTA
AAATAATGAGTATGCAGGGACAGATAACAGATTCAAATATAAGTGAGATTTTACATCCTGAAGTCCAAAC
TCTAGATCTACGGAGCTGCGATATATCAGATGCTGCTCTCCTGCACCTGTCTAACTGTAGAAAACTGAAG
AAATTAAATTTAAATGCTTCAAAAGGGAACCGAGTTTCTGTAACTTCAGAAGGAATAAAAGCTGTGGCTT
CATCTTGTTCATACCTACACGAAGCTTCTTTGAAAAGATGCTGCAATCTCACTGACGAAGGAGTCGTTGC
TCTTGCACTCAATTGCCAGCTGCTAAAGATCATCGATTTAGGTGGCTGCTTAAGTATTACTGATGTGTCC
TTACATGCATTAGGAAAAAACTGCCCATTTTTGCAGTGTGTCGACTTTTCAGCTACTCAGGTATCTGACA
GTGGTGTGATTGCACTTGTTAGTGGACCTTGTGCGAAGAAATTAGAGGAGATTCATATGGGACATTGTGT
AAATCTGACTGATGGGGCTGTCGAAGCTGTCCTTACTTACTGTCCTCAAATACGTATATTACTCTTCCAT
GGATGCCCCTTGATAACAGATCATTCCCGAGAAGTGTTGGAGCAATTAGTAGGCCCAAACAAACTAAAGC
AAGTGACATGGACTGTTTATTGA

Translation (240 aa):
MKNISRYLTDIKPLPPNIKDRLIKIMSMQGQITDSNISEILHPEVQTLDLRSCDISDAALLHLSNCRKLK
KLNLNASKGNRVSVTSEGIKAVASSCSYLHEASLKRCCNLTDEGVVALALNCQLLKIIDLGGCLSITDVS
LHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAVLTYCPQIRILLFH
GCPLITDHSREVLEQLVGPNKLKQVTWTVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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