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Report for CCDS9332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9332.1 Public Homo sapiens 13 SLC46A3 24 110 108 CCDS HistoryNCBI Gene:283537Re-query CCDS DB by CCDS ID:9332.1Re-query CCDS DB by GeneID:283537See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266943.11 ENSP00000266943.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266943.11Link to Ensembl Protein Viewer:ENSP00000266943.7Re-query CCDS DB by Nucleotide ID:ENST00000266943Re-query CCDS DB by Protein ID:ENSP00000266943
Original member Current member NCBI NM_001347960.2 NP_001334889.1 Accepted alive Link to Nucleotide Sequence:NM_001347960.2Link to Protein Sequence:NP_001334889.1Re-query CCDS DB by Nucleotide ID:NM_001347960Re-query CCDS DB by Protein ID:NP_001334889Link to BLAST:NP_001334889.1
Original member Current member NCBI NM_181785.4 NP_861450.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181785.4Link to Protein Sequence:NP_861450.1Re-query CCDS DB by Nucleotide ID:NM_181785Re-query CCDS DB by Protein ID:NP_861450Link to BLAST:NP_861450.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334889.1 461 Q7Z3Q1-1 461 100% 0 0
NP_861450.1 461 Q7Z3Q1-1 461 100% 0 0

Chromosomal Locations for CCDS 9332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 28701497 28701581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 28703943 28704099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 28710760 28710843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 28712680 28713550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 28717810 28717998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAAGATTTTATTTGTAGAACCTGCCATTTTCCTTAGTGCATTTGCTATGACTTTGACCGGTCCACTGA
CAACGCAATATGTTTATCGGAGAATATGGGAAGAAACTGGCAACTACACTTTTTCATCTGATAGCAATAT
TTCTGAGTGTGAAAAAAACAAAAGCAGCCCAATTTTTGCATTCCAGGAGGAAGTTCAGAAAAAAGTGTCA
CGTTTTAATCTGCAGATGGACATAAGTGGATTAATTCCTGGTCTAGTGTCTACATTCATACTTTTGTCTA
TTAGTGATCACTACGGACGAAAATTCCCTATGATTTTGTCTTCCGTTGGTGCTCTTGCAACCAGCGTTTG
GCTCTGTTTGCTTTGCTATTTTGCCTTTCCATTCCAGCTTTTGATTGCATCTACCTTCATTGGTGCATTT
TGTGGCAATTATACCACATTTTGGGGAGCTTGCTTTGCCTATATAGTTGATCAGTGTAAAGAACACAAAC
AAAAAACAATTCGAATAGCTATCATTGACTTTCTACTTGGACTTGTTACTGGACTAACAGGACTGTCATC
TGGCTATTTTATTAGAGAGCTAGGTTTTGAGTGGTCGTTTCTAATTATTGCTGTGTCTCTTGCTGTTAAT
TTGATCTATATTTTATTTTTTCTCGGAGATCCAGTGAAAGAGTGTTCATCTCAGAATGTTACTATGTCAT
GTAGTGAAGGCTTCAAAAACCTATTTTACCGAACTTACATGCTTTTTAAGAATGCTTCTGGTAAGAGACG
ATTTTTGCTCTGTTTGTTACTTTTTACAGTAATCACTTATTTTTTTGTGGTAATTGGCATTGCCCCAATT
TTTATCCTTTATGAATTGGATTCACCACTCTGCTGGAATGAAGTTTTTATAGGTTATGGATCAGCTTTGG
GTAGTGCCTCTTTTTTGACTAGTTTCCTAGGAATATGGCTTTTTTCTTATTGTATGGAAGATATTCATAT
GGCCTTCATTGGGATTTTTACCACGATGACAGGAATGGCTATGACCGCGTTTGCCAGTACAACACTGATG
ATGTTTTTAGCCAGGGTGCCGTTCCTTTTCACTATTGTGCCATTCTCTGTTCTACGGTCCATGTTGTCAA
AAGTGGTTCGTTCGACTGAACAAGGTACCCTGTTTGCTTGTATTGCTTTCTTAGAAACACTTGGAGGAGT
CACTGCAGTTTCTACTTTTAATGGAATTTACTCAGCCACTGTTGCTTGGTACCCTGGCTTCACTTTCCTG
CTGTCTGCTGGTCTGTTACTACTTCCAGCCATCAGTCTATGTGTTGTCAAGTGTACCAGCTGGAATGAGG
GAAGCTATGAACTTCTTATACAAGAAGAATCCAGTGAAGATGCTTCAGACAGGTGA

Translation (461 aa):
MKILFVEPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECEKNKSSPIFAFQEEVQKKVS
RFNLQMDISGLIPGLVSTFILLSISDHYGRKFPMILSSVGALATSVWLCLLCYFAFPFQLLIASTFIGAF
CGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVN
LIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYMLFKNASGKRRFLLCLLLFTVITYFFVVIGIAPI
FILYELDSPLCWNEVFIGYGSALGSASFLTSFLGIWLFSYCMEDIHMAFIGIFTTMTGMAMTAFASTTLM
MFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATVAWYPGFTFL
LSAGLLLLPAISLCVVKCTSWNEGSYELLIQEESSEDASDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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