NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34524.1 Public Homo sapiens 6 SLC35F1 24 110 108 CCDS HistoryNCBI Gene:222553Re-query CCDS DB by CCDS ID:34524.1Re-query CCDS DB by GeneID:222553See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34524.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360388.9 ENSP00000353557.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360388.9Link to Ensembl Protein Viewer:ENSP00000353557.4Re-query CCDS DB by Nucleotide ID:ENST00000360388Re-query CCDS DB by Protein ID:ENSP00000353557
Original member Current member NCBI NM_001029858.4 NP_001025029.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029858.4Link to Protein Sequence:NP_001025029.2Re-query CCDS DB by Nucleotide ID:NM_001029858Re-query CCDS DB by Protein ID:NP_001025029Link to BLAST:NP_001025029.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025029.2 408 Q5T1Q4-1 408 100% 0 0

Chromosomal Locations for CCDS 34524.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 117907727 117907899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118154445 118154620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118235509 118235636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118266995 118267154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118275459 118275615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118277494 118277546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118285184 118285338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118314028 118314252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGATCCCCCCTGAGCAGCCGCAGCAGCAGCTGCAGCCGCCGTCGCCAGCCCCGCCGAACCATGTGGTGA
CCACCATCGAGAACCTGCCGGCCGAGGGCAGCGGCGGCGGCGGGAGCCTGTCCGCCTCCTCCCGGGCTGG
CGTGCGCCAGAGGATCCGCAAAGTGCTGAACAGGGAGATGTTAATCTCTGTGGCCCTAGGCCAGGTGTTA
TCCCTCCTTATTTGTGGAATTGGCTTGACTAGCAAGTATCTGTCAGAAGATTTCCACGCCAACACACCAG
TCTTCCAGAGTTTCCTCAATTACATTCTTCTCTTCTTGGTCTATACCACCACACTAGCCGTCAGACAAGG
AGAAGAAAACCTCCTGGCAATTTTACGACGAAGATGGTGGAAGTACATGATTTTGGGACTCATAGACCTG
GAAGCAAATTATCTGGTGGTCAAGGCTTACCAATACACAACTCTGACCAGTATCCAGCTCCTGGACTGTT
TTGTGATCCCAGTCGTGATTTTGCTCTCCTGGTTCTTCCTGCTGATCCGGTACAAGGCTGTGCATTTCAT
CGGCATCGTTGTCTGCATCCTGGGAATGGGCTGCATGGTGGGAGCAGATGTGCTTGTGGGAAGACATCAG
GGAGCAGGGGAAAATAAGCTGGTAGGGGACCTTCTGGTCTTAGGAGGAGCCACACTCTATGGTATTTCTA
ACGTCTGGGAAGAATACATCATCCGAACTCTGAGCCGAGTGGAATTCCTGGGAATGATTGGTCTCTTTGG
AGCATTTTTCAGTGGAATTCAATTAGCTATAATGGAGCATAAGGAACTGTTGAAGGTGCCCTGGGACTGG
CAAATAGGACTGCTCTACGTTGGCTTTAGTGCCTGCATGTTTGGTCTCTACAGCTTTATGCCAGTCGTCA
TAAAGAAAACCAGTGCCACTTCAGTCAACCTCTCCTTGCTCACAGCAGACTTGTACAGCCTGTTCTGTGG
ATTGTTTCTCTTCCACTACAAGTTTTCAGGACTTTATCTCCTGTCTTTCTTCACCATCCTCATTGGGCTG
GTGCTCTACTCCTCCACCTCCACCTACATAGCCCAGGACCCCCGAGTGTATAAGCAGTTCCGCAATCCTT
CAGGACCTGTTGTGGACTTACCGACCACAGCTCAGGTGGAACCCTCAGTCACCTACACCAGCCTGGGCCA
GGAGACCGAAGAGGAGCCTCATGTTCGTGTGGCCTAG

Translation (408 aa):
MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQRIRKVLNREMLISVALGQVL
SLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAILRRRWWKYMILGLIDL
EANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQ
GAGENKLVGDLLVLGGATLYGISNVWEEYIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDW
QIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGL
VLYSSTSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEPSVTYTSLGQETEEEPHVRVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH