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Report for CCDS6749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6749.1 Public Homo sapiens 9 MSANTD3 24 110 108 CCDS HistoryNCBI Gene:91283Re-query CCDS DB by CCDS ID:6749.1Re-query CCDS DB by GeneID:91283See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395067.7 ENSP00000378506.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395067.7Link to Ensembl Protein Viewer:ENSP00000378506.2Re-query CCDS DB by Nucleotide ID:ENST00000395067Re-query CCDS DB by Protein ID:ENSP00000378506
Original member Current member EBI ENST00000613183.1 ENSP00000480445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613183.1Link to Ensembl Protein Viewer:ENSP00000480445.1Re-query CCDS DB by Nucleotide ID:ENST00000613183Re-query CCDS DB by Protein ID:ENSP00000480445
Original member Current member EBI ENST00000622639.4 ENSP00000480622.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622639.4Link to Ensembl Protein Viewer:ENSP00000480622.1Re-query CCDS DB by Nucleotide ID:ENST00000622639Re-query CCDS DB by Protein ID:ENSP00000480622
Original member Current member NCBI NM_001198805.2 NP_001185734.1 Accepted alive Link to Nucleotide Sequence:NM_001198805.2Link to Protein Sequence:NP_001185734.1Re-query CCDS DB by Nucleotide ID:NM_001198805Re-query CCDS DB by Protein ID:NP_001185734Link to BLAST:NP_001185734.1
Original member Current member NCBI NM_001198806.2 NP_001185735.1 Accepted alive Link to Nucleotide Sequence:NM_001198806.2Link to Protein Sequence:NP_001185735.1Re-query CCDS DB by Nucleotide ID:NM_001198806Re-query CCDS DB by Protein ID:NP_001185735Link to BLAST:NP_001185735.1
Original member Current member NCBI NM_080655.3 NP_542386.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080655.3Link to Protein Sequence:NP_542386.1Re-query CCDS DB by Nucleotide ID:NM_080655Re-query CCDS DB by Protein ID:NP_542386Link to BLAST:NP_542386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185734.1 275 Q96H12-1 275 100% 0 0
NP_001185735.1 275 Q96H12-1 275 100% 0 0
NP_542386.1 275 Q96H12-1 275 100% 0 0

Chromosomal Locations for CCDS 6749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100441939 100442356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100450557 100450966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGCAAAACAACGAAATTATAAAGCCTGCCAAATACTTCTCAGAATTGGAAAAGAGCATCCTGCTGGCTT
TAGTAGAAAAGTATAAATATGTGCTGGAATGTAAGAAAAGTGATGCGCGAACTATTGCCCTTAAGCAGCG
TACCTGGCAGGCGCTGGCCCACGAATACAACTCTCAGCCCAGCGTGTCCCTGCGGGATTTCAAACAGCTG
AAGAAGTGCTGGGAGAACATCAAGGCTCGGACCAAAAAAATTATGGCCCATGAAAGGAGAGAGAAAGTGA
AACGGAGCGTCAGCCCTCTCCTGAGTACCCACGTCCTAGGGAAGGAGAAGATCGCCAGCATGCTGCCGGA
GCAGCTCTACTTCCTGCAGAGCCCCCCGGAGGAGGAGCCCGAATACCACCCCGACGCCTCAGCCCAAGAA
TCATTTGCTGTTTCAAATAGAGAACTGTGCGATGATGAGAAAGAGTTCATACATTTTCCAGTATGTGAGG
GGACCTCTCAACCTGAACCCTCGTGTTCAGCTGTCAGAATAACAGCCAATAAAAACTACAGGAGCAAAAC
CTCTCAGGAAGGTGCTTTAAAAAAGATGCATGAGGAAGAACACCATCAACAAATGTCCATCTTACAACTG
CAACTGATACAAATGAATGAGGTGCATGTGGCCAAAATCCAGCAGATAGAGCGAGAGTGTGAGATGGCAG
AGGAGGAACACAGGATAAAAATGGAAGTTCTCAATAAAAAGAAGATGTATTGGGAAAGAAAACTACAAAC
TTTTACCAAGGAATGGCCTGTTTCCTCATTTAACCGGCCCTTTCCCAATTCGCCCTAA

Translation (275 aa):
MQNNEIIKPAKYFSELEKSILLALVEKYKYVLECKKSDARTIALKQRTWQALAHEYNSQPSVSLRDFKQL
KKCWENIKARTKKIMAHERREKVKRSVSPLLSTHVLGKEKIASMLPEQLYFLQSPPEEEPEYHPDASAQE
SFAVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITANKNYRSKTSQEGALKKMHEEEHHQQMSILQL
QLIQMNEVHVAKIQQIERECEMAEEEHRIKMEVLNKKKMYWERKLQTFTKEWPVSSFNRPFPNSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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