NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43370.1 Public Homo sapiens 5 CXXC5 24 110 108 CCDS HistoryNCBI Gene:51523Re-query CCDS DB by CCDS ID:43370.1Re-query CCDS DB by GeneID:51523See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43370.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302517.8 ENSP00000302543.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302517.8Link to Ensembl Protein Viewer:ENSP00000302543.3Re-query CCDS DB by Nucleotide ID:ENST00000302517Re-query CCDS DB by Protein ID:ENSP00000302543
Original member Current member EBI ENST00000511048.1 ENSP00000427379.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511048.1Link to Ensembl Protein Viewer:ENSP00000427379.1Re-query CCDS DB by Nucleotide ID:ENST00000511048Re-query CCDS DB by Protein ID:ENSP00000427379
Original member Current member NCBI NM_001317199.2 NP_001304128.1 Accepted alive Link to Nucleotide Sequence:NM_001317199.2Link to Protein Sequence:NP_001304128.1Re-query CCDS DB by Nucleotide ID:NM_001317199Re-query CCDS DB by Protein ID:NP_001304128Link to BLAST:NP_001304128.1
Original member Current member NCBI NM_001317200.2 NP_001304129.1 Accepted alive Link to Nucleotide Sequence:NM_001317200.2Link to Protein Sequence:NP_001304129.1Re-query CCDS DB by Nucleotide ID:NM_001317200Re-query CCDS DB by Protein ID:NP_001304129Link to BLAST:NP_001304129.1
Original member Current member NCBI NM_001317201.2 NP_001304130.1 Accepted alive Link to Nucleotide Sequence:NM_001317201.2Link to Protein Sequence:NP_001304130.1Re-query CCDS DB by Nucleotide ID:NM_001317201Re-query CCDS DB by Protein ID:NP_001304130Link to BLAST:NP_001304130.1
Original member Current member NCBI NM_001317202.2 NP_001304131.1 Accepted alive Link to Nucleotide Sequence:NM_001317202.2Link to Protein Sequence:NP_001304131.1Re-query CCDS DB by Nucleotide ID:NM_001317202Re-query CCDS DB by Protein ID:NP_001304131Link to BLAST:NP_001304131.1
Original member Current member NCBI NM_001317203.2 NP_001304132.1 Accepted alive Link to Nucleotide Sequence:NM_001317203.2Link to Protein Sequence:NP_001304132.1Re-query CCDS DB by Nucleotide ID:NM_001317203Re-query CCDS DB by Protein ID:NP_001304132Link to BLAST:NP_001304132.1
Original member Current member NCBI NM_001317204.2 NP_001304133.1 Accepted alive Link to Nucleotide Sequence:NM_001317204.2Link to Protein Sequence:NP_001304133.1Re-query CCDS DB by Nucleotide ID:NM_001317204Re-query CCDS DB by Protein ID:NP_001304133Link to BLAST:NP_001304133.1
Original member Current member NCBI NM_001317205.2 NP_001304134.1 Accepted alive Link to Nucleotide Sequence:NM_001317205.2Link to Protein Sequence:NP_001304134.1Re-query CCDS DB by Nucleotide ID:NM_001317205Re-query CCDS DB by Protein ID:NP_001304134Link to BLAST:NP_001304134.1
Original member Current member NCBI NM_001317206.2 NP_001304135.1 Accepted alive Link to Nucleotide Sequence:NM_001317206.2Link to Protein Sequence:NP_001304135.1Re-query CCDS DB by Nucleotide ID:NM_001317206Re-query CCDS DB by Protein ID:NP_001304135Link to BLAST:NP_001304135.1
Original member Current member NCBI NM_001317207.2 NP_001304136.1 Accepted alive Link to Nucleotide Sequence:NM_001317207.2Link to Protein Sequence:NP_001304136.1Re-query CCDS DB by Nucleotide ID:NM_001317207Re-query CCDS DB by Protein ID:NP_001304136Link to BLAST:NP_001304136.1
Original member Current member NCBI NM_001317208.2 NP_001304137.1 Accepted alive Link to Nucleotide Sequence:NM_001317208.2Link to Protein Sequence:NP_001304137.1Re-query CCDS DB by Nucleotide ID:NM_001317208Re-query CCDS DB by Protein ID:NP_001304137Link to BLAST:NP_001304137.1
Original member Current member NCBI NM_001317209.2 NP_001304138.1 Accepted alive Link to Nucleotide Sequence:NM_001317209.2Link to Protein Sequence:NP_001304138.1Re-query CCDS DB by Nucleotide ID:NM_001317209Re-query CCDS DB by Protein ID:NP_001304138Link to BLAST:NP_001304138.1
Original member Current member NCBI NM_001317210.2 NP_001304139.1 Accepted alive Link to Nucleotide Sequence:NM_001317210.2Link to Protein Sequence:NP_001304139.1Re-query CCDS DB by Nucleotide ID:NM_001317210Re-query CCDS DB by Protein ID:NP_001304139Link to BLAST:NP_001304139.1
Original member Current member NCBI NM_001317211.2 NP_001304140.1 Accepted alive Link to Nucleotide Sequence:NM_001317211.2Link to Protein Sequence:NP_001304140.1Re-query CCDS DB by Nucleotide ID:NM_001317211Re-query CCDS DB by Protein ID:NP_001304140Link to BLAST:NP_001304140.1
Original member Current member NCBI NM_016463.9 NP_057547.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016463.9Link to Protein Sequence:NP_057547.5Re-query CCDS DB by Nucleotide ID:NM_016463Re-query CCDS DB by Protein ID:NP_057547Link to BLAST:NP_057547.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304128.1 322 Q7LFL8-1 322 100% 0 0
NP_001304129.1 322 Q7LFL8-1 322 100% 0 0
NP_001304130.1 322 Q7LFL8-1 322 100% 0 0
NP_001304131.1 322 Q7LFL8-1 322 100% 0 0
NP_001304132.1 322 Q7LFL8-1 322 100% 0 0
NP_001304133.1 322 Q7LFL8-1 322 100% 0 0
NP_001304134.1 322 Q7LFL8-1 322 100% 0 0
NP_001304135.1 322 Q7LFL8-1 322 100% 0 0
NP_001304136.1 322 Q7LFL8-1 322 100% 0 0
NP_001304137.1 322 Q7LFL8-1 322 100% 0 0
NP_001304138.1 322 Q7LFL8-1 322 100% 0 0
NP_001304139.1 322 Q7LFL8-1 322 100% 0 0
NP_001304140.1 322 Q7LFL8-1 322 100% 0 0
NP_057547.5 322 Q7LFL8-1 322 100% 0 0

Chromosomal Locations for CCDS 43370.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139680524 139681447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139682863 139682907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGCAGCACCAATGGCAGCGGTG
GCAGTGGCAGCAGTGGCCCAAAGGCAGGAGCAGCAGACAAGAGTGCAGTGGTGGCTGCCGCCGCACCAGC
CTCAGTGGCAGATGACACACCACCCCCCGAGCGTCGGAACAAGAGCGGTATCATCAGTGAGCCCCTCAAC
AAGAGCCTGCGCCGCTCCCGCCCGCTCTCCCACTACTCTTCTTTTGGCAGCAGTGGTGGTAGTGGCGGTG
GCAGCATGATGGGCGGAGAGTCTGCTGACAAGGCCACTGCGGCTGCAGCCGCTGCCTCCCTGTTGGCCAA
TGGGCATGACCTGGCGGCGGCCATGGCGGTGGACAAAAGCAACCCTACCTCAAAGCACAAAAGTGGTGCT
GTGGCCAGCCTGCTGAGCAAGGCAGAGCGGGCCACGGAGCTGGCAGCCGAGGGACAGCTGACGCTGCAGC
AGTTTGCGCAGTCCACAGAGATGCTGAAGCGCGTGGTGCAGGAGCATCTCCCGCTGATGAGCGAGGCGGG
TGCTGGCCTGCCTGACATGGAGGCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCCTAC
CTGGGCGCTTTCCCCATCAACCCAGGCCTCTTCATTATGACCCCGGCAGGTGTGTTCCTGGCCGAGAGCG
CGCTGCACATGGCGGGCCTGGCTGAGTACCCCATGCAGGGAGAGCTGGCCTCTGCCATCAGCTCCGGCAA
GAAGAAGCGGAAACGCTGCGGCATGTGCGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGTGCAGCAGT
TGTAGGAATCGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAATGTGAGGAACTCAAAAAGAAGCCTT
CCGCTGCTCTGGAGAAGGTGATGCTTCCGACGGGAGCCGCCTTCCGGTGGTTTCAGTGA

Translation (322 aa):
MSSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGIISEPLN
KSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAMAVDKSNPTSKHKSGA
VASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPDMEAVAGAEALNGQSDFPY
LGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSS
CRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH