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Report for CCDS54998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54998.1 Public Homo sapiens 6 BTBD9 24 110 108 CCDS HistoryNCBI Gene:114781Re-query CCDS DB by CCDS ID:54998.1Re-query CCDS DB by GeneID:114781See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419706.6 ENSP00000415365.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419706.6Link to Ensembl Protein Viewer:ENSP00000415365.2Re-query CCDS DB by Nucleotide ID:ENST00000419706Re-query CCDS DB by Protein ID:ENSP00000415365
Original member Current member NCBI NM_001172418.2 NP_001165889.1 Accepted alive Link to Nucleotide Sequence:NM_001172418.2Link to Protein Sequence:NP_001165889.1Re-query CCDS DB by Nucleotide ID:NM_001172418Re-query CCDS DB by Protein ID:NP_001165889Link to BLAST:NP_001165889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165889.1 582 Q96Q07-2 582 100% 0 0

Chromosomal Locations for CCDS 54998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38174985 38175182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38192519 38192597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38256409 38256516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38288272 38288461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38344984 38345093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38402817 38402903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38577600 38577719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38580218 38580437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38592576 38592840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38593964 38594335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGTGCAGAGCATTATTATATGGTGGAATGCGAGAGTCTCAGCCTGAAGCAGAAATTCCTCTCCAAGACA
CCACTGCAGAAGCATTCACAATGCTACTCAAATATATCTACACTGGGCGGGCAACGCTGACAGATGAGAA
GGAGGAGGTGCTGCTGGACTTTTTGAGCCTGGCTCATAAATATGGATTTCCAGAGCTAGAGGATTCTACC
TCTGAGTATCTCTGCACCATACTTAACATTCAGAATGTCTGCATGACTTTTGATGTTGCCAGTCTCTACT
CACTTCCCAAGTTAACTTGTATGTGCTGCATGTTTATGGATAGGAATGCTCAGGAAGTCCTCTCAAGTGA
AGGTTTCCTCTCCCTTTCTAAGACAGCACTTTTAAACATCGTGTTAAGAGACTCATTTGCAGCTCCCGAA
AAAGATATTTTCCTAGCCTTATTAAACTGGTGTAAGCACAATTCAAAGGAGAATCATGCTGAAATCATGC
AGGCTGTGCGTTTACCTCTCATGAGCCTCACAGAGCTTCTGAATGTTGTGAGGCCTTCAGGACTGCTGTC
TCCTGATGCCATCCTGGATGCCATTAAAGTGCGATCTGAGAGCCGGGATATGGACCTCAATTATAGAGGC
ATGCTCATACCAGAAGAAAACATTGCAACTATGAAGTATGGAGCCCAAGTTGTAAAGGGGGAGCTGAAAT
CAGCCTTATTAGATGGTGATACTCAAAATTATGATTTGGATCATGGATTTTCAAGGCACCCAATTGATGA
TGACTGCCGTTCCGGCATCGAGATTAAGCTAGGTCAGCCATCCATTATCAATCACATACGGATACTCTTG
TGGGACCGAGATAGCCGGTCTTACTCATACTTCATTGAAGTGTCAATGGATGAACTTGATTGGGTCAGAG
TGATAGATCATTCACAATATCTGTGTCGTTCTTGGCAGAAATTATATTTTCCAGCCCGTGTCTGCAGTGG
AGATGGAGTCTCACTATGGTGCCCACTCTGGTCTCGAACTCCTGAGCTCAAGCAATCCTCCCTCCTTGGC
CTTCCAAAGTGCAGGTATATTCGAATTGTTGGGACTCACAACACAGTGAACAAGATTTTTCACATTGTGG
CTTTTGAATGTATGTTTACAAACAAAACCTTCACTCTTGAGAAGGGGCTGATAGTTCCCATGGAGAATGT
TGCAACAATTGCTGATTGTGCCAGTGTGATTGAAGGAGTCAGTCGGAGCCGAAATGCCTTGCTGAATGGG
GACACTAAGAATTATGACTGGGATTCTGGCTACACATGTCACCAGCTAGGAAGTGGTGCGATTGTGGTTC
AGTTGGCACAACCGTACATGATTGGGTCAATACGGTTACTACTTTGGGATTGTGATGATCGAAGCTATAG
CTACTACGTTGAGGTTTCTACCAACCAGCAACAGTGGACCATGGTTGCTGACAGAACTAAAGTCTCCTGC
AAGTCCTGGCAGTCAGTAACTTTTGAAAGGCAGCCTGCCTCCTTCATCCGTATCGTTGGGACACACAACA
CAGCAAATGAGGTGTTCCACTGTGTCCACTTTGAGTGTCCAGAGCAGCAGAGCAGCCAGAAGGAGGAAAA
TAGTGAGGAATCGGGGACAGGGGACACCAGCCTGGCCGGTCAGCAGCTCGACTCCCATGCGCTGCGGGCG
CCTAGTGGCAGCTCACTACCCTCCAGCCCAGGCTCCAACTCACGCTCCCCCAACCGGCAGCACCAATAA

Translation (582 aa):
MCRALLYGGMRESQPEAEIPLQDTTAEAFTMLLKYIYTGRATLTDEKEEVLLDFLSLAHKYGFPELEDST
SEYLCTILNIQNVCMTFDVASLYSLPKLTCMCCMFMDRNAQEVLSSEGFLSLSKTALLNIVLRDSFAAPE
KDIFLALLNWCKHNSKENHAEIMQAVRLPLMSLTELLNVVRPSGLLSPDAILDAIKVRSESRDMDLNYRG
MLIPEENIATMKYGAQVVKGELKSALLDGDTQNYDLDHGFSRHPIDDDCRSGIEIKLGQPSIINHIRILL
WDRDSRSYSYFIEVSMDELDWVRVIDHSQYLCRSWQKLYFPARVCSGDGVSLWCPLWSRTPELKQSSLLG
LPKCRYIRIVGTHNTVNKIFHIVAFECMFTNKTFTLEKGLIVPMENVATIADCASVIEGVSRSRNALLNG
DTKNYDWDSGYTCHQLGSGAIVVQLAQPYMIGSIRLLLWDCDDRSYSYYVEVSTNQQQWTMVADRTKVSC
KSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQSSQKEENSEESGTGDTSLAGQQLDSHALRA
PSGSSLPSSPGSNSRSPNRQHQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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