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Report for CCDS929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
929.1 Public Homo sapiens 1 GJA5 24 110 108 CCDS HistoryNCBI Gene:2702Re-query CCDS DB by CCDS ID:929.1Re-query CCDS DB by GeneID:2702See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000579774.3 ENSP00000463851.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000579774.3Link to Ensembl Protein Viewer:ENSP00000463851.1Re-query CCDS DB by Nucleotide ID:ENST00000579774Re-query CCDS DB by Protein ID:ENSP00000463851
Original member Current member EBI ENST00000621517.1 ENSP00000484552.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621517.1Link to Ensembl Protein Viewer:ENSP00000484552.1Re-query CCDS DB by Nucleotide ID:ENST00000621517Re-query CCDS DB by Protein ID:ENSP00000484552
Original member Current member NCBI NM_005266.7 NP_005257.2 Accepted alive Link to Nucleotide Sequence:NM_005266.7Link to Protein Sequence:NP_005257.2Re-query CCDS DB by Nucleotide ID:NM_005266Re-query CCDS DB by Protein ID:NP_005257Link to BLAST:NP_005257.2
Original member Current member NCBI NM_181703.4 NP_859054.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181703.4Link to Protein Sequence:NP_859054.1Re-query CCDS DB by Nucleotide ID:NM_181703Re-query CCDS DB by Protein ID:NP_859054Link to BLAST:NP_859054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005257.2 358 P36382 358 100% 0 0
NP_859054.1 358 P36382 358 100% 0 0

Chromosomal Locations for CCDS 929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 147758162 147759238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGGCGATTGGAGCTTCCTGGGAAATTTCCTGGAGGAAGTACACAAGCACTCGACCGTGGTAGGCAAGG
TCTGGCTCACTGTCCTCTTCATATTCCGTATGCTCGTGCTGGGCACAGCTGCTGAGTCTTCCTGGGGGGA
TGAGCAGGCTGATTTCCGGTGTGATACGATTCAGCCTGGCTGCCAGAATGTCTGCTACGACCAGGCTTTC
CCCATCTCCCACATTCGCTACTGGGTGCTGCAGATCATCTTCGTCTCCACGCCCTCTCTGGTGTACATGG
GCCACGCCATGCACACTGTGCGCATGCAGGAGAAGCGCAAGCTACGGGAGGCCGAGAGGGCCAAAGAGGT
CCGGGGCTCTGGCTCTTACGAGTACCCGGTGGCAGAGAAGGCAGAACTGTCCTGCTGGGAGGAAGGGAAT
GGAAGGATTGCCCTCCAGGGCACTCTGCTCAACACCTATGTGTGCAGCATCCTGATCCGCACCACCATGG
AGGTGGGCTTCATTGTGGGCCAGTACTTCATCTACGGAATCTTCCTGACCACCCTGCATGTCTGCCGCAG
GAGTCCCTGTCCCCACCCGGTCAACTGTTACGTATCCCGGCCCACAGAGAAGAATGTCTTCATTGTCTTT
ATGCTGGCTGTGGCTGCACTGTCCCTCCTCCTTAGCCTGGCTGAACTCTACCACCTGGGCTGGAAGAAGA
TCAGACAGCGATTTGTCAAACCGCGGCAGCACATGGCTAAGTGCCAGCTTTCTGGCCCCTCTGTGGGCAT
AGTCCAGAGCTGCACACCACCCCCCGACTTTAATCAGTGCCTGGAGAATGGCCCTGGGGGAAAATTCTTC
AATCCCTTCAGCAATAATATGGCCTCCCAACAAAACACAGACAACCTGGTCACCGAGCAAGTACGAGGTC
AGGAGCAGACTCCTGGGGAAGGTTTCATCCAGGTTCGTTATGGCCAGAAGCCTGAGGTGCCCAATGGAGT
CTCACCAGGTCACCGCCTTCCCCATGGCTATCATAGTGACAAGCGACGTCTTAGTAAGGCCAGCAGCAAG
GCAAGGTCAGATGACCTATCAGTGTGA

Translation (358 aa):
MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPGCQNVCYDQAF
PISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGSGSYEYPVAEKAELSCWEEGN
GRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYGIFLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVF
MLAVAALSLLLSLAELYHLGWKKIRQRFVKPRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFF
NPFSNNMASQQNTDNLVTEQVRGQEQTPGEGFIQVRYGQKPEVPNGVSPGHRLPHGYHSDKRRLSKASSK
ARSDDLSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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