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Report for CCDS58564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58564.1 Public Homo sapiens 17 SPATA20 24 110 108 CCDS HistoryNCBI Gene:64847Re-query CCDS DB by CCDS ID:58564.1Re-query CCDS DB by GeneID:64847See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58564.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619622.4 ENSP00000483295.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619622.4Link to Ensembl Protein Viewer:ENSP00000483295.1Re-query CCDS DB by Nucleotide ID:ENST00000619622Re-query CCDS DB by Protein ID:ENSP00000483295
Original member Current member NCBI NM_001258373.2 NP_001245302.1 Accepted alive Link to Nucleotide Sequence:NM_001258373.2Link to Protein Sequence:NP_001245302.1Re-query CCDS DB by Nucleotide ID:NM_001258373Re-query CCDS DB by Protein ID:NP_001245302Link to BLAST:NP_001245302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245302.1 742 Q8TB22-3 742 100% 0 0

Chromosomal Locations for CCDS 58564.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 50548338 50548453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50548554 50548618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50548810 50548964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50549043 50549186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50549286 50549487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50549985 50550115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50550208 50550312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50550536 50550610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50550708 50550917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50550998 50551190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50551511 50551679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50551969 50552180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50554251 50554450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50555232 50555312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50555492 50555662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGCCTGCTGGAGGGAAAGGAAGCCATCCTTCATCTACACCCCAGAGGGTCCCCAACCGCCTGATCCACG
AGAAGTCACCATACCTCCTACAACATGCCTACAATCCTGTGGACTGGTACCCCTGGGGACAGGAAGCCTT
CGACAAGGCCAGGAAGGAAAACAAGCCGATTTTCCTCTCAGTCGGGTACTCCACCTGCCACTGGTGCCAC
ATGATGGAAGAGGAGTCCTTCCAGAATGAGGAGATTGGCCGCCTGCTCAGTGAGGACTTTGTGAGTGTGA
AGGTAGACCGTGAGGAGCGGCCTGACGTGGACAAGGTGTACATGACGTTCGTGCAGGCCACCAGCAGCGG
CGGGGGCTGGCCCATGAATGTGTGGCTGACTCCCAACCTCCAGCCCTTTGTCGGGGGCACCTATTTCCCT
CCTGAGGATGGCTTGACCCGAGTCGGCTTCCGCACAGTGTTGCTGAGAATACGAGAACAGTGGAAACAGA
ACAAGAACACCCTGCTAGAAAATAGCCAGCGTGTCACCACTGCCCTGCTGGCCCGATCAGAGATCAGCGT
GGGTGACCGCCAGCTGCCGCCCTCTGCCGCCACCGTGAACAATCGCTGCTTCCAGCAGCTGGATGAGGGC
TATGATGAGGAATACGGTGGCTTCGCTGAGGCCCCCAAGTTTCCCACGCCGGTGATCCTGAGCTTCCTGT
TCTCCTACTGGCTCAGCCATCGACTGACTCAGGATGGCTCTCGGGCCCAGCAGATGGCCTTGCATACCCT
GAAAATGATGGCTAACGGGGGCATCCGGGACCATGTGGGGCAGGGCTTTCACCGCTACTCCACAGACCGC
CAGTGGCACGTCCCTCACTTTGAGAAGATGCTCTATGACCAGGCACAGCTCGCTGTGGCCTATTCGCAGG
CCTTCCAGCTCTCTGGTGATGAATTCTACTCTGACGTGGCCAAAGGCATCCTGCAGTACGTGGCTCGGAG
CCTGAGCCACCGGTCCGGAGGCTTCTATAGCGCAGAAGATGCAGACTCGCCCCCAGAGCGGGGCCAGCGG
CCCAAAGAGGGCGCCTACTATGTGTGGACGGTCAAAGAGGTTCAGCAGCTCCTCCCGGAGCCTGTGTTGG
GTGCCACCGAGCCGCTGACCTCAGGCCAGCTCCTCATGAAGCACTACGGCCTCACAGAGGCTGGTAACAT
CAGCCCCAGTCAGGACCCCAAGGGGGAGCTGCAGGGCCAGAATGTGCTGACCGTCCGGTACTCGCTGGAG
CTGACTGCTGCCCGCTTTGGCTTGGATGTGGAGGCCGTGCGGACCTTGCTCAATTCAGGGCTGGAGAAGC
TCTTCCAGGCCCGGAAGCATCGGCCCAAGCCGCACCTGGACAGCAAGATGCTGGCTGCCTGGAATGGCTT
GATGGTGTCAGGCTATGCTGTGACTGGGGCTGTCCTGGGCCAAGACAGGCTGATCAACTATGCCACCAAT
GGTGCCAAGTTCCTGAAGCGGCACATGTTTGATGTGGCCAGTGGCCGCCTGATGCGGACCTGCTACACCG
GCCCTGGGGGGACTGTGGAGCACAGCAACCCACCCTGCTGGGGCTTCCTGGAGGACTACGCCTTCGTGGT
GCGGGGCCTGCTGGACCTGTATGAGGCCTCACAGGAGAGTGCGTGGCTCGAGTGGGCTCTGCGGCTGCAG
GACACACAGGACAAGCTCTTTTGGGACTCCCAGGGTGGCGGCTACTTCTGCAGTGAGGCTGAGCTGGGGG
CTGGCCTGCCCCTGCGTCTGAAGGACGACCAGGATGGAGCAGAGCCCAGCGCCAATTCCGTGTCAGCCCA
CAACCTGCTCCGGCTGCATGGCTTCACGGGCCACAAGGACTGGATGGACAAGTGTGTGTGCCTATTGACC
GCCTTTTCCGAGCGCATGCGTCGTGTCCCGGTGGCGTTGCCCGAGATGGTCCGCGCCCTCTCAGCCCAGC
AGCAGACCCTCAAGCAGATCGTGATCTGTGGAGACCGTCAGGCCAAGGACACCAAGGCCCTGGTGCAGTG
CGTCCACTCTGTCTACATTCCTAACAAGGTGCTGATTCTGGCTGATGGGGACCCCTCGAGCTTCCTGTCC
CGCCAGCTGCCTTTCCTGAGTACCCTCCGACGGTTGGAAGACCAGGCCACTGCATATGTGTGTGAGAATC
AAGCCTGCTCAGTGCCCATCACTGATCCCTGCGAATTACGAAAACTACTACATCCATGA

Translation (742 aa):
MPAGGKGSHPSSTPQRVPNRLIHEKSPYLLQHAYNPVDWYPWGQEAFDKARKENKPIFLSVGYSTCHWCH
MMEEESFQNEEIGRLLSEDFVSVKVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPNLQPFVGGTYFP
PEDGLTRVGFRTVLLRIREQWKQNKNTLLENSQRVTTALLARSEISVGDRQLPPSAATVNNRCFQQLDEG
YDEEYGGFAEAPKFPTPVILSFLFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIRDHVGQGFHRYSTDR
QWHVPHFEKMLYDQAQLAVAYSQAFQLSGDEFYSDVAKGILQYVARSLSHRSGGFYSAEDADSPPERGQR
PKEGAYYVWTVKEVQQLLPEPVLGATEPLTSGQLLMKHYGLTEAGNISPSQDPKGELQGQNVLTVRYSLE
LTAARFGLDVEAVRTLLNSGLEKLFQARKHRPKPHLDSKMLAAWNGLMVSGYAVTGAVLGQDRLINYATN
GAKFLKRHMFDVASGRLMRTCYTGPGGTVEHSNPPCWGFLEDYAFVVRGLLDLYEASQESAWLEWALRLQ
DTQDKLFWDSQGGGYFCSEAELGAGLPLRLKDDQDGAEPSANSVSAHNLLRLHGFTGHKDWMDKCVCLLT
AFSERMRRVPVALPEMVRALSAQQQTLKQIVICGDRQAKDTKALVQCVHSVYIPNKVLILADGDPSSFLS
RQLPFLSTLRRLEDQATAYVCENQACSVPITDPCELRKLLHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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