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Report for CCDS4928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4928.1 Public Homo sapiens 6 CRISP2 24 110 108 CCDS HistoryNCBI Gene:7180Re-query CCDS DB by CCDS ID:4928.1Re-query CCDS DB by GeneID:7180See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4928.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339139.5 ENSP00000339155.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339139.5Link to Ensembl Protein Viewer:ENSP00000339155.4Re-query CCDS DB by Nucleotide ID:ENST00000339139Re-query CCDS DB by Protein ID:ENSP00000339155
Original member Current member EBI ENST00000616725.4 ENSP00000484609.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616725.4Link to Ensembl Protein Viewer:ENSP00000484609.1Re-query CCDS DB by Nucleotide ID:ENST00000616725Re-query CCDS DB by Protein ID:ENSP00000484609
Original member Current member NCBI NM_001142407.3 NP_001135879.1 Accepted alive Link to Nucleotide Sequence:NM_001142407.3Link to Protein Sequence:NP_001135879.1Re-query CCDS DB by Nucleotide ID:NM_001142407Re-query CCDS DB by Protein ID:NP_001135879Link to BLAST:NP_001135879.1
Original member Current member NCBI NM_001142408.3 NP_001135880.1 Accepted alive Link to Nucleotide Sequence:NM_001142408.3Link to Protein Sequence:NP_001135880.1Re-query CCDS DB by Nucleotide ID:NM_001142408Re-query CCDS DB by Protein ID:NP_001135880Link to BLAST:NP_001135880.1
Original member Current member NCBI NM_001142417.3 NP_001135889.1 Accepted alive Link to Nucleotide Sequence:NM_001142417.3Link to Protein Sequence:NP_001135889.1Re-query CCDS DB by Nucleotide ID:NM_001142417Re-query CCDS DB by Protein ID:NP_001135889Link to BLAST:NP_001135889.1
Original member Current member NCBI NM_001142435.3 NP_001135907.1 Accepted alive Link to Nucleotide Sequence:NM_001142435.3Link to Protein Sequence:NP_001135907.1Re-query CCDS DB by Nucleotide ID:NM_001142435Re-query CCDS DB by Protein ID:NP_001135907Link to BLAST:NP_001135907.1
Original member Current member NCBI NM_001261822.2 NP_001248751.1 Accepted alive Link to Nucleotide Sequence:NM_001261822.2Link to Protein Sequence:NP_001248751.1Re-query CCDS DB by Nucleotide ID:NM_001261822Re-query CCDS DB by Protein ID:NP_001248751Link to BLAST:NP_001248751.1
Original member Current member NCBI NM_003296.4 NP_003287.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003296.4Link to Protein Sequence:NP_003287.1Re-query CCDS DB by Nucleotide ID:NM_003296Re-query CCDS DB by Protein ID:NP_003287Link to BLAST:NP_003287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135879.1 243 P16562-1 243 100% 0 0
NP_001135880.1 243 P16562-1 243 100% 0 0
NP_001135889.1 243 P16562-1 243 100% 0 0
NP_001135907.1 243 P16562-1 243 100% 0 0
NP_001248751.1 243 P16562-1 243 100% 0 0
NP_003287.1 243 P16562-1 243 100% 0 0

Chromosomal Locations for CCDS 4928.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49692773 49692900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49695836 49695924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49697860 49697957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49698362 49698507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49699804 49699891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49700668 49700784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49709131 49709196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCTTTACTACCGGTGTTGTTTCTGGTTACTGTGCTGCTTCCATCTTTACCTGCAGAAGGAAAGGATC
CCGCTTTTACTGCTTTGTTAACCACCCAGTTGCAAGTGCAAAGGGAGATTGTAAATAAACACAATGAACT
AAGGAAAGCAGTCTCTCCACCTGCCAGTAACATGCTAAAGATGGAATGGAGCAGAGAGGTAACAACGAAT
GCCCAAAGGTGGGCAAACAAGTGCACTTTACAACATAGTGATCCAGAGGACCGCAAAACCAGTACAAGAT
GTGGTGAGAATCTCTATATGTCAAGTGACCCTACTTCCTGGTCTTCTGCAATCCAAAGCTGGTATGACGA
GATCCTAGATTTTGTCTATGGTGTAGGACCAAAGAGTCCCAATGCAGTTGTTGGACATTATACTCAGCTT
GTTTGGTACTCGACTTACCAGGTAGGCTGTGGAATTGCCTACTGTCCCAATCAAGATAGTCTAAAATACT
ACTATGTTTGCCAATATTGTCCTGCTGGTAATAATATGAATAGAAAGAATACCCCGTACCAACAAGGAAC
ACCTTGTGCCGGTTGCCCTGATGACTGTGACAAAGGACTATGCACCAATAGTTGCCAGTATCAAGATCTC
CTAAGTAACTGTGATTCCTTGAAGAATACAGCTGGCTGTGAACATGAGTTACTCAAGGAAAAGTGCAAGG
CTACTTGCCTATGTGAGAACAAAATTTACTGA

Translation (243 aa):
MALLPVLFLVTVLLPSLPAEGKDPAFTALLTTQLQVQREIVNKHNELRKAVSPPASNMLKMEWSREVTTN
AQRWANKCTLQHSDPEDRKTSTRCGENLYMSSDPTSWSSAIQSWYDEILDFVYGVGPKSPNAVVGHYTQL
VWYSTYQVGCGIAYCPNQDSLKYYYVCQYCPAGNNMNRKNTPYQQGTPCAGCPDDCDKGLCTNSCQYQDL
LSNCDSLKNTAGCEHELLKEKCKATCLCENKIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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