NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
840.1 Public Homo sapiens 1 RAP1A 24 110 108 CCDS HistoryNCBI Gene:5906Re-query CCDS DB by CCDS ID:840.1Re-query CCDS DB by GeneID:5906See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356415.5 ENSP00000348786.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356415.5Link to Ensembl Protein Viewer:ENSP00000348786.1Re-query CCDS DB by Nucleotide ID:ENST00000356415Re-query CCDS DB by Protein ID:ENSP00000348786
Original member Current member EBI ENST00000369709.4 ENSP00000358723.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369709.4Link to Ensembl Protein Viewer:ENSP00000358723.3Re-query CCDS DB by Nucleotide ID:ENST00000369709Re-query CCDS DB by Protein ID:ENSP00000358723
Original member Current member EBI ENST00000687939.1 ENSP00000509234.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687939.1Link to Ensembl Protein Viewer:ENSP00000509234.1Re-query CCDS DB by Nucleotide ID:ENST00000687939Re-query CCDS DB by Protein ID:ENSP00000509234
Original member Current member NCBI NM_001010935.3 NP_001010935.1 Accepted alive Link to Nucleotide Sequence:NM_001010935.3Link to Protein Sequence:NP_001010935.1Re-query CCDS DB by Nucleotide ID:NM_001010935Re-query CCDS DB by Protein ID:NP_001010935Link to BLAST:NP_001010935.1
Original member Current member NCBI NM_001291896.3 NP_001278825.1 Accepted alive Link to Nucleotide Sequence:NM_001291896.3Link to Protein Sequence:NP_001278825.1Re-query CCDS DB by Nucleotide ID:NM_001291896Re-query CCDS DB by Protein ID:NP_001278825Link to BLAST:NP_001278825.1
Original member Current member NCBI NM_001370216.2 NP_001357145.1 Accepted alive Link to Nucleotide Sequence:NM_001370216.2Link to Protein Sequence:NP_001357145.1Re-query CCDS DB by Nucleotide ID:NM_001370216Re-query CCDS DB by Protein ID:NP_001357145Link to BLAST:NP_001357145.1
Original member Current member NCBI NM_001370217.2 NP_001357146.1 Accepted alive Link to Nucleotide Sequence:NM_001370217.2Link to Protein Sequence:NP_001357146.1Re-query CCDS DB by Nucleotide ID:NM_001370217Re-query CCDS DB by Protein ID:NP_001357146Link to BLAST:NP_001357146.1
Original member Current member NCBI NM_001394066.1 NP_001380995.1 Accepted alive Link to Nucleotide Sequence:NM_001394066.1Link to Protein Sequence:NP_001380995.1Re-query CCDS DB by Nucleotide ID:NM_001394066Re-query CCDS DB by Protein ID:NP_001380995Link to BLAST:NP_001380995.1
Original member Current member NCBI NM_002884.4 NP_002875.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002884.4Link to Protein Sequence:NP_002875.1Re-query CCDS DB by Nucleotide ID:NM_002884Re-query CCDS DB by Protein ID:NP_002875Link to BLAST:NP_002875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010935.1 184 P62834 184 100% 0 0
NP_001278825.1 184 P62834 184 100% 0 0
NP_001357145.1 184 P62834 184 100% 0 0
NP_001357146.1 184 P62834 184 100% 0 0
NP_001380995.1 184 P62834 184 100% 0 0
NP_002875.1 184 P62834 184 100% 0 0

Chromosomal Locations for CCDS 840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 111691361 111691417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111695341 111695409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111697441 111697497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111703336 111703476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111704343 111704486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111709149 111709235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGCGTGAGTACAAGCTAGTGGTCCTTGGTTCAGGAGGCGTTGGGAAGTCTGCTCTGACAGTTCAGTTTG
TTCAGGGAATTTTTGTTGAAAAATATGACCCAACGATAGAAGATTCCTACAGAAAGCAAGTTGAAGTCGA
TTGCCAACAGTGTATGCTCGAAATCCTGGATACTGCAGGGACAGAGCAATTTACAGCAATGAGGGATTTG
TATATGAAGAACGGCCAAGGTTTTGCACTAGTATATTCTATTACAGCTCAGTCCACGTTTAACGACTTAC
AGGACCTGAGGGAACAGATTTTACGGGTTAAGGACACGGAAGATGTTCCAATGATTTTGGTTGGCAATAA
ATGTGACCTGGAAGATGAGCGAGTAGTTGGCAAAGAGCAGGGCCAGAATTTAGCAAGACAGTGGTGTAAC
TGTGCCTTTTTAGAATCTTCTGCAAAGTCAAAGATCAATGTTAATGAGATATTTTATGACCTGGTCAGAC
AGATAAATAGGAAAACACCAGTGGAAAAGAAGAAGCCTAAAAAGAAATCATGTCTGCTGCTCTAG

Translation (184 aa):
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL
YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN
CAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH