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Report for CCDS1328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1328.1 Public Homo sapiens 1 FAM20B 24 110 108 CCDS HistoryNCBI Gene:9917Re-query CCDS DB by CCDS ID:1328.1Re-query CCDS DB by GeneID:9917See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263733.5 ENSP00000263733.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263733.5Link to Ensembl Protein Viewer:ENSP00000263733.4Re-query CCDS DB by Nucleotide ID:ENST00000263733Re-query CCDS DB by Protein ID:ENSP00000263733
Original member Current member NCBI NM_001324310.2 NP_001311239.1 Accepted alive Link to Nucleotide Sequence:NM_001324310.2Link to Protein Sequence:NP_001311239.1Re-query CCDS DB by Nucleotide ID:NM_001324310Re-query CCDS DB by Protein ID:NP_001311239Link to BLAST:NP_001311239.1
Original member Current member NCBI NM_001324311.2 NP_001311240.1 Accepted alive Link to Nucleotide Sequence:NM_001324311.2Link to Protein Sequence:NP_001311240.1Re-query CCDS DB by Nucleotide ID:NM_001324311Re-query CCDS DB by Protein ID:NP_001311240Link to BLAST:NP_001311240.1
Original member Current member NCBI NM_014864.4 NP_055679.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014864.4Link to Protein Sequence:NP_055679.1Re-query CCDS DB by Nucleotide ID:NM_014864Re-query CCDS DB by Protein ID:NP_055679Link to BLAST:NP_055679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311239.1 409 O75063 409 100% 0 0
NP_001311240.1 409 O75063 409 100% 0 0
NP_055679.1 409 O75063 409 100% 0 0

Chromosomal Locations for CCDS 1328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179043848 179044224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179050279 179050365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179054529 179054638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179063927 179064098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179064305 179064496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179066800 179066859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179071913 179072144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGAAGCTAAAGCAGCGAGTCGTGCTGTTAGCAATTCTCCTTGTCATTTTTATCTTCACCAAAGTTTTCC
TGATTGACAACTTAGATACATCAGCTGCCAACCGGGAGGACCAGAGGGCCTTTCACCGAATGATGACTGG
CTTGCGGGTGGAGCTGGCACCCAAGCTGGACCATACCTTGCAGTCTCCCTGGGAGATTGCAGCCCAGTGG
GTGGTTCCCCGGGAAGTGTACCCTGAAGAGACACCAGAGCTGGGGGCAGTCATGCATGCCATGGCCACCA
AGAAAATCATTAAAGCTGATGTGGGTTATAAAGGGACACAGCTGAAAGCCTTACTGATACTTGAAGGAGG
CCAGAAAGTTGTTTTCAAACCTAAGCGGTATAGCCGAGACCATGTGGTGGAAGGGGAACCGTATGCTGGT
TATGATAGACACAATGCAGAGGTAGCAGCCTTTCACTTGGACAGGATTCTGGGTTTCCACCGAGCCCCCT
TGGTAGTTGGCAGATTTGTTAATCTTCGGACAGAGATCAAACCTGTCGCCACAGAGCAGCTGTTGAGCAC
CTTCCTAACTGTAGGAAACAATACTTGTTTTTATGGGAAGTGCTATTACTGCCGAGAAACAGAACCAGCT
TGTGCTGATGGAGACATAATGGAGGGATCTGTCACACTTTGGCTTCCAGATGTGTGGCCTCTGCAGAAGC
ACCGTCACCCATGGGGCAGGACTTACCGAGAAGGCAAATTGGCCAGGTGGGAGTATGATGAGAGCTACTG
TGATGCTGTGAAGAAAACGTCCCCTTATGACTCTGGCCCGCGCCTCTTGGACATCATTGACACAGCTGTC
TTTGATTACCTGATTGGCAATGCTGACCGCCATCACTATGAGAGCTTTCAAGATGATGAAGGCGCTAGTA
TGCTCATCCTTCTTGATAATGCCAAAAGCTTTGGGAACCCCTCGCTGGATGAAAGAAGCATTCTTGCCCC
TCTCTATCAGTGTTGCATCATTCGGGTGTCCACCTGGAACAGACTGAACTACCTAAAGAATGGTGTGCTA
AAGTCTGCCTTAAAATCTGCCATGGCCCATGACCCCATCTCCCCAGTGCTCTCTGATCCTCATCTGGACG
CCGTGGACCAGCGGCTCCTGAGTGTCCTGGCCACCGTGAAGCAGTGCACCGACCAGTTTGGGATGGACAC
AGTACTGGTGGAAGACAGGATGCCTCTCTCACACTTGTAA

Translation (409 aa):
MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRMMTGLRVELAPKLDHTLQSPWEIAAQW
VVPREVYPEETPELGAVMHAMATKKIIKADVGYKGTQLKALLILEGGQKVVFKPKRYSRDHVVEGEPYAG
YDRHNAEVAAFHLDRILGFHRAPLVVGRFVNLRTEIKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPA
CADGDIMEGSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDIIDTAV
FDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNYLKNGVL
KSALKSAMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQFGMDTVLVEDRMPLSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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