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Report for CCDS41346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41346.1 Public Homo sapiens 1 JAK1 24 110 108 CCDS HistoryNCBI Gene:3716Re-query CCDS DB by CCDS ID:41346.1Re-query CCDS DB by GeneID:3716See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342505.5 ENSP00000343204.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342505.5Link to Ensembl Protein Viewer:ENSP00000343204.4Re-query CCDS DB by Nucleotide ID:ENST00000342505Re-query CCDS DB by Protein ID:ENSP00000343204
Original member Current member EBI ENST00000672247.2 ENSP00000499884.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672247.2Link to Ensembl Protein Viewer:ENSP00000499884.1Re-query CCDS DB by Nucleotide ID:ENST00000672247Re-query CCDS DB by Protein ID:ENSP00000499884
Original member Current member EBI ENST00000672434.2 ENSP00000499900.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672434.2Link to Ensembl Protein Viewer:ENSP00000499900.1Re-query CCDS DB by Nucleotide ID:ENST00000672434Re-query CCDS DB by Protein ID:ENSP00000499900
Original member Current member EBI ENST00000672179.2 ENSP00000500296.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672179.2Link to Ensembl Protein Viewer:ENSP00000500296.1Re-query CCDS DB by Nucleotide ID:ENST00000672179Re-query CCDS DB by Protein ID:ENSP00000500296
Original member Current member EBI ENST00000671929.2 ENSP00000500485.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671929.2Link to Ensembl Protein Viewer:ENSP00000500485.1Re-query CCDS DB by Nucleotide ID:ENST00000671929Re-query CCDS DB by Protein ID:ENSP00000500485
Original member Current member EBI ENST00000672751.2 ENSP00000500745.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672751.2Link to Ensembl Protein Viewer:ENSP00000500745.2Re-query CCDS DB by Nucleotide ID:ENST00000672751Re-query CCDS DB by Protein ID:ENSP00000500745
Original member Current member EBI ENST00000671954.2 ENSP00000500841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671954.2Link to Ensembl Protein Viewer:ENSP00000500841.1Re-query CCDS DB by Nucleotide ID:ENST00000671954Re-query CCDS DB by Protein ID:ENSP00000500841
Original member Current member EBI ENST00000699262.1 ENSP00000514243.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699262.1Link to Ensembl Protein Viewer:ENSP00000514243.1Re-query CCDS DB by Nucleotide ID:ENST00000699262Re-query CCDS DB by Protein ID:ENSP00000514243
Original member Current member EBI ENST00000699312.1 ENSP00000514291.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699312.1Link to Ensembl Protein Viewer:ENSP00000514291.1Re-query CCDS DB by Nucleotide ID:ENST00000699312Re-query CCDS DB by Protein ID:ENSP00000514291
Original member Current member NCBI NM_001320923.2 NP_001307852.1 Accepted alive Link to Nucleotide Sequence:NM_001320923.2Link to Protein Sequence:NP_001307852.1Re-query CCDS DB by Nucleotide ID:NM_001320923Re-query CCDS DB by Protein ID:NP_001307852Link to BLAST:NP_001307852.1
Original member Current member NCBI NM_001321852.2 NP_001308781.1 Accepted alive Link to Nucleotide Sequence:NM_001321852.2Link to Protein Sequence:NP_001308781.1Re-query CCDS DB by Nucleotide ID:NM_001321852Re-query CCDS DB by Protein ID:NP_001308781Link to BLAST:NP_001308781.1
Original member Current member NCBI NM_001321853.2 NP_001308782.1 Accepted alive Link to Nucleotide Sequence:NM_001321853.2Link to Protein Sequence:NP_001308782.1Re-query CCDS DB by Nucleotide ID:NM_001321853Re-query CCDS DB by Protein ID:NP_001308782Link to BLAST:NP_001308782.1
Original member Current member NCBI NM_001321854.2 NP_001308783.1 Accepted alive Link to Nucleotide Sequence:NM_001321854.2Link to Protein Sequence:NP_001308783.1Re-query CCDS DB by Nucleotide ID:NM_001321854Re-query CCDS DB by Protein ID:NP_001308783Link to BLAST:NP_001308783.1
Original member Current member NCBI NM_001321855.2 NP_001308784.1 Accepted alive Link to Nucleotide Sequence:NM_001321855.2Link to Protein Sequence:NP_001308784.1Re-query CCDS DB by Nucleotide ID:NM_001321855Re-query CCDS DB by Protein ID:NP_001308784Link to BLAST:NP_001308784.1
Original member Current member NCBI NM_001321856.2 NP_001308785.1 Accepted alive Link to Nucleotide Sequence:NM_001321856.2Link to Protein Sequence:NP_001308785.1Re-query CCDS DB by Nucleotide ID:NM_001321856Re-query CCDS DB by Protein ID:NP_001308785Link to BLAST:NP_001308785.1
Original member Current member NCBI NM_002227.4 NP_002218.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002227.4Link to Protein Sequence:NP_002218.2Re-query CCDS DB by Nucleotide ID:NM_002227Re-query CCDS DB by Protein ID:NP_002218Link to BLAST:NP_002218.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307852.1 1154 P23458 1154 100% 0 0
NP_001308781.1 1154 P23458 1154 100% 0 0
NP_001308782.1 1154 P23458 1154 100% 0 0
NP_001308783.1 1154 P23458 1154 100% 0 0
NP_001308784.1 1154 P23458 1154 100% 0 0
NP_001308785.1 1154 P23458 1154 100% 0 0
NP_002218.2 1154 P23458 1154 100% 0 0

Chromosomal Locations for CCDS 41346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64834562 64834657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64835396 64835506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64836098 64836215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64837932 64838104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64838465 64838589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64839603 64839795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64841245 64841339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64841451 64841601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64844064 64844215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64844754 64844889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64845513 64845640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64846649 64846736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64847532 64847675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64850804 64850910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64855509 64855698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64857656 64857779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64860105 64860262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64864787 64864972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64866866 64867208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64869311 64869474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64873370 64873523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64879025 64879148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64883277 64883475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64886259 64886264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3465 nt):
ATGCAGTATCTAAATATAAAAGAGGACTGCAATGCCATGGCTTTCTGTGCTAAAATGAGGAGCTCCAAGA
AGACTGAGGTGAACCTGGAGGCCCCTGAGCCAGGGGTGGAAGTGATCTTCTATCTGTCGGACAGGGAGCC
CCTCCGGCTGGGCAGTGGAGAGTACACAGCAGAGGAACTGTGCATCAGGGCTGCACAGGCATGCCGTATC
TCTCCTCTTTGTCACAACCTCTTTGCCCTGTATGACGAGAACACCAAGCTCTGGTATGCTCCAAATCGCA
CCATCACCGTTGATGACAAGATGTCCCTCCGGCTCCACTACCGGATGAGGTTCTATTTCACCAATTGGCA
TGGAACCAACGACAATGAGCAGTCAGTGTGGCGTCATTCTCCAAAGAAGCAGAAAAATGGCTACGAGAAA
AAAAAGATTCCAGATGCAACCCCTCTCCTTGATGCCAGCTCACTGGAGTATCTGTTTGCTCAGGGACAGT
ATGATTTGGTGAAATGCCTGGCTCCTATTCGAGACCCCAAGACCGAGCAGGATGGACATGATATTGAGAA
CGAGTGTCTAGGGATGGCTGTCCTGGCCATCTCACACTATGCCATGATGAAGAAGATGCAGTTGCCAGAA
CTGCCCAAGGACATCAGCTACAAGCGATATATTCCAGAAACATTGAATAAGTCCATCAGACAGAGGAACC
TTCTCACCAGGATGCGGATAAATAATGTTTTCAAGGATTTCCTAAAGGAATTTAACAACAAGACCATTTG
TGACAGCAGCGTGTCCACGCATGACCTGAAGGTGAAATACTTGGCTACCTTGGAAACTTTGACAAAACAT
TACGGTGCTGAAATATTTGAGACTTCCATGTTACTGATTTCATCAGAAAATGAGATGAATTGGTTTCATT
CGAATGACGGTGGAAACGTTCTCTACTACGAAGTGATGGTGACTGGGAATCTTGGAATCCAGTGGAGGCA
TAAACCAAATGTTGTTTCTGTTGAAAAGGAAAAAAATAAACTGAAGCGGAAAAAACTGGAAAATAAACAC
AAGAAGGATGAGGAGAAAAACAAGATCCGGGAAGAGTGGAACAATTTTTCTTACTTCCCTGAAATCACTC
ACATTGTAATAAAGGAGTCTGTGGTCAGCATTAACAAGCAGGACAACAAGAAAATGGAACTGAAGCTCTC
TTCCCACGAGGAGGCCTTGTCCTTTGTGTCCCTGGTAGATGGCTACTTCCGGCTCACAGCAGATGCCCAT
CATTACCTCTGCACCGACGTGGCCCCCCCGTTGATCGTCCACAACATACAGAATGGCTGTCATGGTCCAA
TCTGTACAGAATACGCCATCAATAAATTGCGGCAAGAAGGAAGCGAGGAGGGGATGTACGTGCTGAGGTG
GAGCTGCACCGACTTTGACAACATCCTCATGACCGTCACCTGCTTTGAGAAGTCTGAGCAGGTGCAGGGT
GCCCAGAAGCAGTTCAAGAACTTTCAGATCGAGGTGCAGAAGGGCCGCTACAGTCTGCACGGTTCGGACC
GCAGCTTCCCCAGCTTGGGAGACCTCATGAGCCACCTCAAGAAGCAGATCCTGCGCACGGATAACATCAG
CTTCATGCTAAAACGCTGCTGCCAGCCCAAGCCCCGAGAAATCTCCAACCTGCTGGTGGCTACTAAGAAA
GCCCAGGAGTGGCAGCCCGTCTACCCCATGAGCCAGCTGAGTTTCGATCGGATCCTCAAGAAGGATCTGG
TGCAGGGCGAGCACCTTGGGAGAGGCACGAGAACACACATCTATTCTGGGACCCTGATGGATTACAAGGA
TGACGAAGGAACTTCTGAAGAGAAGAAGATAAAAGTGATCCTCAAAGTCTTAGACCCCAGCCACAGGGAT
ATTTCCCTGGCCTTCTTCGAGGCAGCCAGCATGATGAGACAGGTCTCCCACAAACACATCGTGTACCTCT
ATGGCGTCTGTGTCCGCGACGTGGAGAATATCATGGTGGAAGAGTTTGTGGAAGGGGGTCCTCTGGATCT
CTTCATGCACCGGAAAAGCGATGTCCTTACCACACCATGGAAATTCAAAGTTGCCAAACAGCTGGCCAGT
GCCCTGAGCTACTTGGAGGATAAAGACCTGGTCCATGGAAATGTGTGTACTAAAAACCTCCTCCTGGCCC
GTGAGGGCATCGACAGTGAGTGTGGCCCATTCATCAAGCTCAGTGACCCCGGCATCCCCATTACGGTGCT
GTCTAGGCAAGAATGCATTGAACGAATCCCATGGATTGCTCCTGAGTGTGTTGAGGACTCCAAGAACCTG
AGTGTGGCTGCTGACAAGTGGAGCTTTGGAACCACGCTCTGGGAAATCTGCTACAATGGCGAGATCCCCT
TGAAAGACAAGACGCTGATTGAGAAAGAGAGATTCTATGAAAGCCGGTGCAGGCCAGTGACACCATCATG
TAAGGAGCTGGCTGACCTCATGACCCGCTGCATGAACTATGACCCCAATCAGAGGCCTTTCTTCCGAGCC
ATCATGAGAGACATTAATAAGCTTGAAGAGCAGAATCCAGATATTGTTTCAGAAAAAAAACCAGCAACTG
AAGTGGACCCCACACATTTTGAAAAGCGCTTCCTAAAGAGGATCCGTGACTTGGGAGAGGGCCACTTTGG
GAAGGTTGAGCTCTGCAGGTATGACCCCGAAGGGGACAATACAGGGGAGCAGGTGGCTGTTAAATCTCTG
AAGCCTGAGAGTGGAGGTAACCACATAGCTGATCTGAAAAAGGAAATCGAGATCTTAAGGAACCTCTATC
ATGAGAACATTGTGAAGTACAAAGGAATCTGCACAGAAGACGGAGGAAATGGTATTAAGCTCATCATGGA
ATTTCTGCCTTCGGGAAGCCTTAAGGAATATCTTCCAAAGAATAAGAACAAAATAAACCTCAAACAGCAG
CTAAAATATGCCGTTCAGATTTGTAAGGGGATGGACTATTTGGGTTCTCGGCAATACGTTCACCGGGACT
TGGCAGCAAGAAATGTCCTTGTTGAGAGTGAACACCAAGTGAAAATTGGAGACTTCGGTTTAACCAAAGC
AATTGAAACCGATAAGGAGTATTACACCGTCAAGGATGACCGGGACAGCCCTGTGTTTTGGTATGCTCCA
GAATGTTTAATGCAATCTAAATTTTATATTGCCTCTGACGTCTGGTCTTTTGGAGTCACTCTGCATGAGC
TGCTGACTTACTGTGATTCAGATTCTAGTCCCATGGCTTTGTTCCTGAAAATGATAGGCCCAACCCATGG
CCAGATGACAGTCACAAGACTTGTGAATACGTTAAAAGAAGGAAAACGCCTGCCGTGCCCACCTAACTGT
CCAGATGAGGTTTATCAACTTATGAGGAAATGCTGGGAATTCCAACCATCCAATCGGACAAGCTTTCAGA
ACCTTATTGAAGGATTTGAAGCACTTTTAAAATAA

Translation (1154 aa):
MQYLNIKEDCNAMAFCAKMRSSKKTEVNLEAPEPGVEVIFYLSDREPLRLGSGEYTAEELCIRAAQACRI
SPLCHNLFALYDENTKLWYAPNRTITVDDKMSLRLHYRMRFYFTNWHGTNDNEQSVWRHSPKKQKNGYEK
KKIPDATPLLDASSLEYLFAQGQYDLVKCLAPIRDPKTEQDGHDIENECLGMAVLAISHYAMMKKMQLPE
LPKDISYKRYIPETLNKSIRQRNLLTRMRINNVFKDFLKEFNNKTICDSSVSTHDLKVKYLATLETLTKH
YGAEIFETSMLLISSENEMNWFHSNDGGNVLYYEVMVTGNLGIQWRHKPNVVSVEKEKNKLKRKKLENKH
KKDEEKNKIREEWNNFSYFPEITHIVIKESVVSINKQDNKKMELKLSSHEEALSFVSLVDGYFRLTADAH
HYLCTDVAPPLIVHNIQNGCHGPICTEYAINKLRQEGSEEGMYVLRWSCTDFDNILMTVTCFEKSEQVQG
AQKQFKNFQIEVQKGRYSLHGSDRSFPSLGDLMSHLKKQILRTDNISFMLKRCCQPKPREISNLLVATKK
AQEWQPVYPMSQLSFDRILKKDLVQGEHLGRGTRTHIYSGTLMDYKDDEGTSEEKKIKVILKVLDPSHRD
ISLAFFEAASMMRQVSHKHIVYLYGVCVRDVENIMVEEFVEGGPLDLFMHRKSDVLTTPWKFKVAKQLAS
ALSYLEDKDLVHGNVCTKNLLLAREGIDSECGPFIKLSDPGIPITVLSRQECIERIPWIAPECVEDSKNL
SVAADKWSFGTTLWEICYNGEIPLKDKTLIEKERFYESRCRPVTPSCKELADLMTRCMNYDPNQRPFFRA
IMRDINKLEEQNPDIVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSL
KPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQ
LKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAP
ECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNC
PDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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