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Report for CCDS41820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41820.1 Public Homo sapiens 12 CEP83 24 110 108 CCDS HistoryNCBI Gene:51134Re-query CCDS DB by CCDS ID:41820.1Re-query CCDS DB by GeneID:51134See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339839.9 ENSP00000344655.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339839.9Link to Ensembl Protein Viewer:ENSP00000344655.5Re-query CCDS DB by Nucleotide ID:ENST00000339839Re-query CCDS DB by Protein ID:ENSP00000344655
Original member Current member EBI ENST00000397809.10 ENSP00000380911.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397809.10Link to Ensembl Protein Viewer:ENSP00000380911.4Re-query CCDS DB by Nucleotide ID:ENST00000397809Re-query CCDS DB by Protein ID:ENSP00000380911
Original member Current member NCBI NM_001042399.2 NP_001035858.1 Accepted alive Link to Nucleotide Sequence:NM_001042399.2Link to Protein Sequence:NP_001035858.1Re-query CCDS DB by Nucleotide ID:NM_001042399Re-query CCDS DB by Protein ID:NP_001035858Link to BLAST:NP_001035858.1
Original member Current member NCBI NM_001346457.2 NP_001333386.1 Accepted alive Link to Nucleotide Sequence:NM_001346457.2Link to Protein Sequence:NP_001333386.1Re-query CCDS DB by Nucleotide ID:NM_001346457Re-query CCDS DB by Protein ID:NP_001333386Link to BLAST:NP_001333386.1
Original member Current member NCBI NM_001368037.1 NP_001354966.1 Accepted alive Link to Nucleotide Sequence:NM_001368037.1Link to Protein Sequence:NP_001354966.1Re-query CCDS DB by Nucleotide ID:NM_001368037Re-query CCDS DB by Protein ID:NP_001354966Link to BLAST:NP_001354966.1
Original member Current member NCBI NM_001368038.1 NP_001354967.1 Accepted alive Link to Nucleotide Sequence:NM_001368038.1Link to Protein Sequence:NP_001354967.1Re-query CCDS DB by Nucleotide ID:NM_001368038Re-query CCDS DB by Protein ID:NP_001354967Link to BLAST:NP_001354967.1
Original member Current member NCBI NM_016122.3 NP_057206.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016122.3Link to Protein Sequence:NP_057206.2Re-query CCDS DB by Nucleotide ID:NM_016122Re-query CCDS DB by Protein ID:NP_057206Link to BLAST:NP_057206.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035858.1 701 Q9Y592-1 701 100% 0 0
NP_001333386.1 701 Q9Y592-1 701 100% 0 0
NP_001354966.1 701 Q9Y592-1 701 100% 0 0
NP_001354967.1 701 Q9Y592-1 701 100% 0 0
NP_057206.2 701 Q9Y592-1 701 100% 0 0

Chromosomal Locations for CCDS 41820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 94308813 94308917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94309918 94310107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94312914 94313017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94331700 94331829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94333482 94333639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94335589 94335664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94367794 94367943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94368057 94368201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94369922 94370036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94375886 94376017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94378791 94379042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94400850 94400981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94403170 94403262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94411697 94411847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 94412318 94412490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGTTGTCAGCACATTTACCGATATGGACACTTTTCCCAATAATTTTCCTCCTGGTGGAGACAGTGGAT
TGACAGGTTCTCAGTCGGAGTTCCAGAAAATGTTAATTGATGAAAGGTTACGATGTGAGCATCATAAAGC
TAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGTAAAGTTACAAAATGAACTC
AAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTGAAGAACTAAGAGGAG
AATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAAAAATTGGAATT
GCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGATGAAGAG
GTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTGAAC
ACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACT
GGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTG
GAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAAT
TAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGC
TGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTTTG
GAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAG
AAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAA
ACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGA
TTACAGTCAGACAATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATC
GTGAATTAATACGTAAAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGA
AAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATGTCTGGAGGCAA
TCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGGAAGGAGC
TTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGA
AAATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAAT
GACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTA
GAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGATACAGTGGTTGGA
AGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAGGAGAAACTG
CAGCGAGCTGCAATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACAAATTGAAAAGACTACAAGAGA
AAGTAGAAGTCTTGGAGGCAAAGAAAGAAGAATTGGAAACAGAAAATCAGGTCTTAAATAGACAAAATGT
TCCTTTTGAAGACTATACAAGGCTTCAAAAAAGACTAAAAGATATACAGAGAAGACATAATGAATTTCGA
AGTCTAATTTTGGTTCCTAACATGCCTCCAACAGCATCTATCAATCCTGTTAGCTTTCAGTCATCAGCCA
TGGTTCCAAGCATGGAACTACCATTTCCTCCTCATATGCAGGAGGAACAACATCAAAGGGAACTCTCTCT
ACTTCGCAAAAGACTAGAAGAACTGGAAACAACACAAAGAAAACAACTAGAGGAACTTGGATCTTCCGGA
GAATGA

Translation (701 aa):
MVVSTFTDMDTFPNNFPPGGDSGLTGSQSEFQKMLIDERLRCEHHKANYQTLKAEHTRLQNEHVKLQNEL
KHLFNEKQTQQEKLQLLLEELRGELVEKTKDLEEMKLQILTPQKLELLRAQIQQELETPMRERFRNLDEE
VEKYRAVYNKLRYEHTFLKSEFEHQKEEYARILDEGKIKYESEIARLEEDKEELRNQLLNVDLTKDSKRV
EQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERL
EKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKIQSELDG
LQSDNEILKAAVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQ
SEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQIVTIENAEKEKNENSDLKQQISSLQIQVTSLAQSEN
DLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKL
QRAAIAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEDYTRLQKRLKDIQRRHNEFR
SLILVPNMPPTASINPVSFQSSAMVPSMELPFPPHMQEEQHQRELSLLRKRLEELETTQRKQLEELGSSG
E


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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