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Report for CCDS14095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14095.1 Public Homo sapiens 22 SCO2 24 110 108 CCDS HistoryNCBI Gene:9997Re-query CCDS DB by CCDS ID:14095.1Re-query CCDS DB by GeneID:9997See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14095.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252785.3 ENSP00000252785.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252785.3Link to Ensembl Protein Viewer:ENSP00000252785.3Re-query CCDS DB by Nucleotide ID:ENST00000252785Re-query CCDS DB by Protein ID:ENSP00000252785
Original member Current member EBI ENST00000395693.8 ENSP00000379046.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395693.8Link to Ensembl Protein Viewer:ENSP00000379046.4Re-query CCDS DB by Nucleotide ID:ENST00000395693Re-query CCDS DB by Protein ID:ENSP00000379046
Original member Current member EBI ENST00000535425.5 ENSP00000444242.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535425.5Link to Ensembl Protein Viewer:ENSP00000444242.1Re-query CCDS DB by Nucleotide ID:ENST00000535425Re-query CCDS DB by Protein ID:ENSP00000444242
Original member Current member EBI ENST00000543927.6 ENSP00000444433.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543927.6Link to Ensembl Protein Viewer:ENSP00000444433.1Re-query CCDS DB by Nucleotide ID:ENST00000543927Re-query CCDS DB by Protein ID:ENSP00000444433
Original member Current member NCBI NM_001169109.2 NP_001162580.1 Accepted alive Link to Nucleotide Sequence:NM_001169109.2Link to Protein Sequence:NP_001162580.1Re-query CCDS DB by Nucleotide ID:NM_001169109Re-query CCDS DB by Protein ID:NP_001162580Link to BLAST:NP_001162580.1
Original member Current member NCBI NM_001169110.1 NP_001162581.1 Accepted alive Link to Nucleotide Sequence:NM_001169110.1Link to Protein Sequence:NP_001162581.1Re-query CCDS DB by Nucleotide ID:NM_001169110Re-query CCDS DB by Protein ID:NP_001162581Link to BLAST:NP_001162581.1
Original member Current member NCBI NM_001169111.2 NP_001162582.1 Accepted alive Link to Nucleotide Sequence:NM_001169111.2Link to Protein Sequence:NP_001162582.1Re-query CCDS DB by Nucleotide ID:NM_001169111Re-query CCDS DB by Protein ID:NP_001162582Link to BLAST:NP_001162582.1
Original member Current member NCBI NM_005138.3 NP_005129.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005138.3Link to Protein Sequence:NP_005129.2Re-query CCDS DB by Nucleotide ID:NM_005138Re-query CCDS DB by Protein ID:NP_005129Link to BLAST:NP_005129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162580.1 266 O43819 266 100% 0 0
NP_001162581.1 266 O43819 266 100% 0 0
NP_001162582.1 266 O43819 266 100% 0 0
NP_005129.2 266 O43819 266 100% 0 0

Chromosomal Locations for CCDS 14095.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50523611 50524411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGCTGCTGCTGACTCGGAGCCCCACAGCTTGGCACAGGCTCTCTCAGCTCAAGCCTCGGGTCCTCCCTG
GGACCCTGGGAGGCCAGGCCCTGCATCTGAGGTCCTGGCTTTTGTCAAGGCAGGGCCCTGCAGAGACAGG
TGGGCAGGGCCAGCCCCAGGGCCCTGGGCTTCGAACCCGGCTGCTGATCACAGGCCTGTTCGGGGCTGGA
CTCGGTGGGGCCTGGCTGGCCCTGAGGGCTGAGAAGGAGAGGCTGCAGCAGCAAAAGCGAACAGAAGCCC
TGCGCCAGGCAGCTGTGGGCCAGGGCGACTTCCACCTGCTGGATCACAGAGGCCGGGCTCGCTGCAAGGC
TGACTTCCGGGGCCAGTGGGTGCTGATGTACTTTGGCTTCACTCACTGCCCTGACATCTGCCCAGACGAG
CTGGAGAAGCTGGTGCAGGTGGTGCGGCAGCTGGAAGCAGAGCCTGGTTTGCCTCCAGTGCAGCCTGTCT
TCATCACTGTGGACCCCGAGCGGGACGACGTTGAAGCCATGGCCCGCTACGTCCAGGACTTCCACCCAAG
ACTGTTGGGTCTGACCGGCTCCACCAAACAGGTTGCCCAGGCTAGTCACAGTTACCGCGTGTACTACAAT
GCAGGCCCCAAGGATGAGGACCAGGACTACATCGTGGACCACTCCATTGCCATCTACCTGCTCAACCCTG
ACGGCCTCTTCACGGATTACTACGGCCGGAGCAGATCGGCTGAGCAGATCTCAGACAGTGTGCGGCGGCA
CATGGCGGCTTTCCGCAGTGTCCTGTCTTGA

Translation (266 aa):
MLLLTRSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTRLLITGLFGAG
LGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDE
LEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYN
AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRSVLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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