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Report for CCDS58825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58825.1 Public Homo sapiens 3 ZNF620 24 110 108 CCDS HistoryNCBI Gene:253639Re-query CCDS DB by CCDS ID:58825.1Re-query CCDS DB by GeneID:253639See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58825.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418905.1 ENSP00000391472.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418905.1Link to Ensembl Protein Viewer:ENSP00000391472.1Re-query CCDS DB by Nucleotide ID:ENST00000418905Re-query CCDS DB by Protein ID:ENSP00000391472
Original member Current member NCBI NM_001256167.2 NP_001243096.1 Accepted alive Link to Nucleotide Sequence:NM_001256167.2Link to Protein Sequence:NP_001243096.1Re-query CCDS DB by Nucleotide ID:NM_001256167Re-query CCDS DB by Protein ID:NP_001243096Link to BLAST:NP_001243096.1
Original member Current member NCBI NM_001256168.2 NP_001243097.1 Accepted alive Link to Nucleotide Sequence:NM_001256168.2Link to Protein Sequence:NP_001243097.1Re-query CCDS DB by Nucleotide ID:NM_001256168Re-query CCDS DB by Protein ID:NP_001243097Link to BLAST:NP_001243097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243096.1 308 Q6ZNG0-2 308 100% 0 0
NP_001243097.1 308 Q6ZNG0-2 308 100% 0 0

Chromosomal Locations for CCDS 58825.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40515937 40516863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGTGGGGGGCCTGCCAGGGAATGTTTCCCAGCACCTTGACTTTGGGAGCAGCCTAGAGCAGCCACAAG
GTCATTGGATAATTAAGACAAAGTCAAAGAGGAGACATTTCACAGATACCTCAGCCAGGCACCATGAGGC
CTATGAGGTCAAGAATGGAGAGAAGTTTGAGAAATTAGGAAAAAATATTAGCGTCAGCACACAACTCACT
ACAAATCAGACAAATCCTAGTGGTCAGATATCTTATGAATGTGGACAATGTGGCAGATATTTCATTCAAA
TGGCAGACTTCCACCGACATGAGAAATGTCACACTGGTGAAAAGTCTTTTGAATGCAAAGAATGTGGAAA
ATACTTCAGATATAACTCATTACTTATTCGGCATCAGATAATTCACACTGGAAAGAAACCATTTAAATGT
AAAGAATGTGGAAAAGGTTTAAGTTCAGACACAGCCTTGATTCAGCATCAGAGAATCCACACTGGAGAAA
AGCCCTATGAATGTAAGGAGTGCGGCAAGGCCTTCAGTAGCAGCTCTGTCTTCCTCCAGCACCAGAGGTT
CCACACTGGGGAGAAGCTCTATGAATGTAACGAATGTTGGAAAACTTTCAGTTGCAGCTCAAGTTTCACT
GTCCATCAGCGAATGCACACTGGGGAGAAACCTTATGAATGTAAAGAGTGTGGAAAACGATTAAGCTCCA
ACACAGCCTTGACTCAGCATCAGCGAATTCACACTGGGGAGAAGCCCTTTGAATGTAAGGAGTGTGGGAA
GGCATTCAATCAGAAAATAACCCTGATTCAGCACCAGCGAGTTCACACTGGCGAGAAACCTTATGAGTGT
AAAGTGTGTGGTAAAACCTTCAGCTGGTGTGGAAGATTCATTCTGCATCAGAAACTACACACTCAGAAGA
CACCTGTCCAAGCATAG

Translation (308 aa):
MVGGLPGNVSQHLDFGSSLEQPQGHWIIKTKSKRRHFTDTSARHHEAYEVKNGEKFEKLGKNISVSTQLT
TNQTNPSGQISYECGQCGRYFIQMADFHRHEKCHTGEKSFECKECGKYFRYNSLLIRHQIIHTGKKPFKC
KECGKGLSSDTALIQHQRIHTGEKPYECKECGKAFSSSSVFLQHQRFHTGEKLYECNECWKTFSCSSSFT
VHQRMHTGEKPYECKECGKRLSSNTALTQHQRIHTGEKPFECKECGKAFNQKITLIQHQRVHTGEKPYEC
KVCGKTFSWCGRFILHQKLHTQKTPVQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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