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Report for CCDS41437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41437.1 Public Homo sapiens 1 RABGAP1L 24 110 108 CCDS HistoryNCBI Gene:9910Re-query CCDS DB by CCDS ID:41437.1Re-query CCDS DB by GeneID:9910See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41437.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000486220.5 ENSP00000432490.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000486220.5Link to Ensembl Protein Viewer:ENSP00000432490.1Re-query CCDS DB by Nucleotide ID:ENST00000486220Re-query CCDS DB by Protein ID:ENSP00000432490
Original member Current member EBI ENST00000478442.5 ENSP00000434600.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478442.5Link to Ensembl Protein Viewer:ENSP00000434600.1Re-query CCDS DB by Nucleotide ID:ENST00000478442Re-query CCDS DB by Protein ID:ENSP00000434600
Original member Current member NCBI NM_001035230.3 NP_001030307.1 Accepted alive Link to Nucleotide Sequence:NM_001035230.3Link to Protein Sequence:NP_001030307.1Re-query CCDS DB by Nucleotide ID:NM_001035230Re-query CCDS DB by Protein ID:NP_001030307Link to BLAST:NP_001030307.1
Original member Current member NCBI NM_001243763.2 NP_001230692.1 Accepted alive Link to Nucleotide Sequence:NM_001243763.2Link to Protein Sequence:NP_001230692.1Re-query CCDS DB by Nucleotide ID:NM_001243763Re-query CCDS DB by Protein ID:NP_001230692Link to BLAST:NP_001230692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030307.1 72 Q5R372-9 72 100% 0 0
NP_001230692.1 72 Q5R372-9 72 100% 0 0

Chromosomal Locations for CCDS 41437.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174877495 174877605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174957457 174957549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174957891 174957905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (219 nt):
ATGATGGAAGAAATCTCCATTATGGTAGCCTATGACGCCCATGTTTTCAGCCAGCTGCACGATGAAGACT
TCCTCACTAGTCTGGTGGCCATCAGCAAGCCCAGGTCTATGGTACCAACCAAGAAGCTGAAGAAATATGA
GAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAGTTTGTA
TATTTGTAG

Translation (72 aa):
MMEEISIMVAYDAHVFSQLHDEDFLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFV
YL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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