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Report for CCDS46800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46800.1 Public Homo sapiens 3 TTC21A 24 110 108 CCDS HistoryNCBI Gene:199223Re-query CCDS DB by CCDS ID:46800.1Re-query CCDS DB by GeneID:199223See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431162.6 ENSP00000398211.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431162.6Link to Ensembl Protein Viewer:ENSP00000398211.2Re-query CCDS DB by Nucleotide ID:ENST00000431162Re-query CCDS DB by Protein ID:ENSP00000398211
Original member Current member NCBI NM_145755.3 NP_665698.2 Accepted alive Link to Nucleotide Sequence:NM_145755.3Link to Protein Sequence:NP_665698.2Re-query CCDS DB by Nucleotide ID:NM_145755Re-query CCDS DB by Protein ID:NP_665698Link to BLAST:NP_665698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665698.2 1320 Q8NDW8-1 1320 100% 0 0

Chromosomal Locations for CCDS 46800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39107838 39107864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39109085 39109214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39110029 39110139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39110851 39111017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39112458 39112580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39114585 39114742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39118069 39118177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39119922 39120020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39120997 39121189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39125063 39125160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39125332 39125532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39126261 39126390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39128334 39128488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39128717 39128932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39129072 39129310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130079 39130151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130248 39130358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130701 39130839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130992 39131095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39133052 39133240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39134218 39134328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39135093 39135174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39136357 39136507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39136899 39137060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39137195 39137387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39137486 39137710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138267 39138387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138556 39138623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138711 39138788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGAGCAGCAATGACTCCTCCCTTATGGCTGGGATCATTTACTATAGCCAGGAAAAGTACTTCCACCATG
TGCAGCAGGCTGCAGCTGTGGGCCTGGAAAAATTCAGCAATGACCCTGTGTTGAAGTTCTTTAAAGCCTA
TGGAGTCCTCAAAGAAGAGCACATCCAGGATGCCATCAGTGACCTGGAAAGCATCAGGCATCACCCAGAC
GTGTCCCTGTGCTCCACCATGGCCCTCATTTATGCTCACAAAAGATGTGAAATCATTGACCGAGAAGCAA
TTCAGGAGCTTGAGTACAGCCTGAAGGAAATACGCAAGACAGTCAGTGGGACTGCACTGTACTATGCTGG
CCTTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAGTACATTGACCGCATGCTGAAGATTTCT
AGAGGCTTCAGAGAGGCCTATGTGCTCAGAGGCTGGGTGGACCTGACCTCAGACAAGCCCCACACTGCGA
AGAAAGCCATTGAGTACCTGGAACAAGGAATTCAGGACACCAAAGATGTGCTGGGGCTGATGGGAAAGGC
AATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACCAGATCACTGTGACTTCA
GGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCAGGACTGGGAGCAGACAG
TAGAAATGGGACACAGAATCCTAGAAAAAGATGAGAGCAATATTGATGCCTGCCAAATTCTAACCGTGCA
TGAGCTTGCAAGAGAAGGAAACATGACCACAGTAAGTTCTTTGAAGACTCAGAAGGCTACCAATCACGTT
AGAAATCTGATTAAGGCACTAGAGACAAGGGAACCCGAAAATCCAAGCCTCCATCTTAAAAAAATTATTG
TGGTTAGCCGACTGTGTGGGAGTCACCAGGTGATTCTAGGGCTAGTGTGTAGTTTCATCGAGCGCACCTT
CATGGCCACCCCCTCGTATGTCCATGTGGCCACAGAACTGGGCTATCTCTTCATCCTGAAGAACCAAGTG
AAAGAGGCCTTGCTGTGGTATTCAGAAGCCATGAAACTGGACAAGGATGGCATGGCTGGTTTGACAGGGA
TCATCTTGTGTCATATCTTAGAAGGCCACCTGGAGGAAGCTGAGTACCGGCTGGAATTCCTGAAGGAGGT
GCAGAAGTCCCTTGGGAAGTCTGAGGTGCTAATTTTCCTCCAAGCCCTCCTGATGTCCAGGAAGCACAAG
GGGGAGGAAGAGACCACAGCGCTCCTGAAGGAGGCAGTGGAGCTTCACTTCTCCAGCATGCAAGGCATCC
CTCTTGGCTCTGAGTACTTTGAAAAGCTGGACCCGTACTTCCTGGTCTGCATTGCTAAGGAGTACTTGCT
CTTCTGCCCCAAGCAGCCCAGGTTACCAGGCCAGATCGTGTCTCCACTTCTTAAACAAGTCGCCGTGATC
TTGAATCCTGTAGTCAAAGCAGCACCAGCTCTGATCGACCCCCTGTATTTGATGGCTCAGGTCAGGTATT
ACTCAGAGCTAGAGAATGCCCAGAGCATCCTGCAGCGTTGCCTGGAGCTGGACCCCGCCTCCGTGGATGC
CCATCTCCTCATGTGTCAGATCTACTTGGCTCAGGGCAACTTTGGCATGTGCTTCCACTGCTTAGAGCTG
GGTGTCAGCCACAACTTCCAGGTCCGAGATCACCCCCTCTACCACCTCATCAAGGCCAGGGCCCTCAACA
AGGCTGGAGACTATCCAGAGGCCATAAAGACGCTGAAAATGGTCATCAAATTGCCAGCTCTGAAGAAGGA
AGAAGGCAGAAAGTTCCTCAGGCCCTCTGTGCAGCCTAGCCAGCGGGCATCCATCTTATTGGAACTGGTG
GAGGCCCTCCGGCTGAATGGGGAGCTACATGAGGCCACCAAGGTCATGCAGGACACCATCAATGAGTTCG
GTGGCACACCAGAAGAGAACCGCATCACCATTGCCAACGTGGACTTGGTCCTGAGCAAGGGCAATGTGGA
CGTGGCGCTGAACATGCTAAGGAACATCTTGCCCAAGCAGTCCTGCTATATGGAAGCCAGAGAGAAGATG
GCCAACATCTACCTGCAGACCCTCAGAGACAGGCGCCTCTACATCAGATGCTACCGTGAGCTCTGTGAAC
ATCTGCCTGGCCCCCACACCAGCCTGCTACTGGGCGATGCCTTAATGAGCATTCTGGAGCCCGAGAAGGC
CCTGGAGGTCTATGATGAGGCCTATAGACAGAACCCACATGACGCCTCCCTGGCCAGCAGAATTGGGCAC
GCTTATGTGAAGGCCCACCAGTATACTGAGGCAATTGAGTATTATGAGGCTGCCCAGAAGATTAATGGAC
AGGACTTTCTGTGCTGCGATCTGGGCAAACTGCTCCTGAAGTTAAAGAAGGTCAATAAAGCAGAAAAAGT
TTTGAAGCAGGCACTGGAACATGACATTGTCCAAGACATCCCATCCATGATGAATGATGTTAAGTGCCTG
CTTTTGCTGGCAAAGGTTTACAAGAGCCATAAAAAAGAAGCTGTGATAGAAACTTTGAACAAGGCCTTGG
ACCTCCAGTCTCGGATACTGAAGCGAGTTCCACTGGAGCAACCAGAAATGATTCCCTCCCAGAAGCAACT
GGCAGCCTCTATCTGCATCCAATTTGCAGAGCACTACCTGGCAGAGAAAGAGTATGACAAGGCGGTACAG
TCTTATAAGGATGTCTTCTCCTACTTGCCAACTGACAATAAGGTGATGCTGGAGCTGGCGCAGCTCTACC
TGCTCCAGGGGCACCTGGACCTGTGTGAGCAGCACTGTGCCATCCTCCTGCAGACTGAGCAGAACCATGA
GACCGCTTCTGTGTTGATGGCTGACCTGATGTTTAGAAAACAGAAACATGAAGCGGCCATCAATCTTTAC
CACCAAGTCTTGGAGAAAGCGCCAGACAATTTTTTGGTATTGCATAAATTAATCGATCTGCTAAGAAGAA
GTGGAAAACTTGAAGACATTCCTGCCTTCTTTGAATTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGA
ACCAGGGTTCAATTACTGCAGAGGTATCTACTGCTGGCACATAGGGCAGCCCAACGAAGCCTTAAAGTTC
CTGAACAAGGCACGCAAGGACAGCACTTGGGGCCAGAGCGCCATCTACCACATGGTGCAGATCTGTCTGA
ATCCAGACAACGAGGTTGTGGGCGGAGAGGCTTTTGAGAACCAGGGAGCTGAGAGCAACTACATGGAGAA
GAAGGAGTTGGAGCAGCAGGGTGTGAGCACCGCCGAGAAACTGCTGCGTGAGTTTTACCCACATTCAGAC
TCCAGCCAGACCCAGCTGCGGCTGCTGCAGGGCCTCTGCCGGCTGGCCACCAGGGAGAAGGCTAACATGG
AGGCTGCGCTGGGCAGCTTCATCCAGATAGCGCAGGCTGAGAAGGACAGCGTCCCTGCCCTGCTGGCCTT
GGCACAAGCCTACGTGTTCCTGAAGCAGATCCCCAAGGCGCGTATGCAGTTGAAGCGCCTGGCCAAGACC
CCCTGGGTGCTGAGTGAGGCTGAGGACCTGGAGAAGAGCTGGCTCCTGCTGGCTGACATTTACTGCCAGG
GCAGCAAGTTCGACCTCGCCTTAGAACTGCTGCGGCGCTGTGTGCAATACAACAAGTCCTGCTACAAGGC
CTATGAGTACATGGGCTTCATCATGGAGAAGGAGCAGTCCTACAAGGATGCAGTCACCAACTACAAACTG
GCCTGGAAGTACAGTCATCACGCCAACCCTGCCATTGGCTTCAAACTTGCTTTCAACTACCTGAAGGACA
AGAAATTTGTGGAGGCCATTGAAATCTGCAACGATGTCCTCAGGGAGCACCCCGACTACCCCAAGATCAG
GGAGGAAATTTTGGAAAAGGCCCGAAGGTCCCTGAGGCCCTAG

Translation (1320 aa):
MSSNDSSLMAGIIYYSQEKYFHHVQQAAAVGLEKFSNDPVLKFFKAYGVLKEEHIQDAISDLESIRHHPD
VSLCSTMALIYAHKRCEIIDREAIQELEYSLKEIRKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKIS
RGFREAYVLRGWVDLTSDKPHTAKKAIEYLEQGIQDTKDVLGLMGKAMYFMMQQNYSEALEVVNQITVTS
GSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACQILTVHELAREGNMTTVSSLKTQKATNHV
RNLIKALETREPENPSLHLKKIIVVSRLCGSHQVILGLVCSFIERTFMATPSYVHVATELGYLFILKNQV
KEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLKEVQKSLGKSEVLIFLQALLMSRKHK
GEEETTALLKEAVELHFSSMQGIPLGSEYFEKLDPYFLVCIAKEYLLFCPKQPRLPGQIVSPLLKQVAVI
LNPVVKAAPALIDPLYLMAQVRYYSELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLEL
GVSHNFQVRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLPALKKEEGRKFLRPSVQPSQRASILLELV
EALRLNGELHEATKVMQDTINEFGGTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKM
ANIYLQTLRDRRLYIRCYRELCEHLPGPHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGH
AYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALEHDIVQDIPSMMNDVKCL
LLLAKVYKSHKKEAVIETLNKALDLQSRILKRVPLEQPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQ
SYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLY
HQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFFELAKKVSSRVPLEPGFNYCRGIYCWHIGQPNEALKF
LNKARKDSTWGQSAIYHMVQICLNPDNEVVGGEAFENQGAESNYMEKKELEQQGVSTAEKLLREFYPHSD
SSQTQLRLLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKT
PWVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKL
AWKYSHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIREEILEKARRSLRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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