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Report for CCDS42895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42895.1 Public Homo sapiens 20 PHACTR3 24 110 108 CCDS HistoryNCBI Gene:116154Re-query CCDS DB by CCDS ID:42895.1Re-query CCDS DB by GeneID:116154See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42895.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355648.8 ENSP00000347866.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355648.8Link to Ensembl Protein Viewer:ENSP00000347866.4Re-query CCDS DB by Nucleotide ID:ENST00000355648Re-query CCDS DB by Protein ID:ENSP00000347866
Original member Current member EBI ENST00000395636.6 ENSP00000378998.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395636.6Link to Ensembl Protein Viewer:ENSP00000378998.2Re-query CCDS DB by Nucleotide ID:ENST00000395636Re-query CCDS DB by Protein ID:ENSP00000378998
Original member Current member EBI ENST00000541461.5 ENSP00000442483.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541461.5Link to Ensembl Protein Viewer:ENSP00000442483.1Re-query CCDS DB by Nucleotide ID:ENST00000541461Re-query CCDS DB by Protein ID:ENSP00000442483
Original member Current member NCBI NM_001199506.2 NP_001186435.1 Accepted alive Link to Nucleotide Sequence:NM_001199506.2Link to Protein Sequence:NP_001186435.1Re-query CCDS DB by Nucleotide ID:NM_001199506Re-query CCDS DB by Protein ID:NP_001186435Link to BLAST:NP_001186435.1
Original member Current member NCBI NM_001281507.2 NP_001268436.1 Accepted alive Link to Nucleotide Sequence:NM_001281507.2Link to Protein Sequence:NP_001268436.1Re-query CCDS DB by Nucleotide ID:NM_001281507Re-query CCDS DB by Protein ID:NP_001268436Link to BLAST:NP_001268436.1
Original member Current member NCBI NM_183244.2 NP_899067.1 Accepted alive Link to Nucleotide Sequence:NM_183244.2Link to Protein Sequence:NP_899067.1Re-query CCDS DB by Nucleotide ID:NM_183244Re-query CCDS DB by Protein ID:NP_899067Link to BLAST:NP_899067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186435.1 518 Q96KR7-2 518 100% 0 0
NP_001268436.1 518 Q96KR7-2 518 100% 0 0
NP_899067.1 518 Q96KR7-2 518 100% 0 0

Chromosomal Locations for CCDS 42895.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 59743112 59743268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59747758 59747835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59755182 59755364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59767186 59767395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59773279 59773453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59774243 59774490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59806041 59806194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59836505 59836560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59840369 59840430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59841395 59841535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59845189 59845265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59847115 59847130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGACCAAACGCCCCCGGCGCGTCCTGAATATCTGGTCTCAGGGATTCGAACTCCCCCTGTGAGGAGGA
ACAGCAAACTGGCCACCCTGGGCAGGATCTTCAAACCCTGGAAATGGAGGAAAAAGAAAAACGAAAAACT
GAAGCAGACAACGTCAGCGCTGGAGAAGAAGATGGCCGGCAGGCAAGGCCGAGAGGAGCTCATCAAGAAG
GGGCTGCTGGAGATGATGGAGCAGGATGCTGAAAGCAAAACTTGCAACCCCGATGGAGGACCCCGATCTG
TACAGAGTGAACCACCCACTCCCAAGTCGGAGACGCTGACTTCAGAAGATGCCCAGCCCGGAAGCCCCTT
GGCCACTGGGACGGACCAGGTCTCCCTGGACAAGCCACTGTCCTCAGCTGCCCACTTGGACGATGCAGCC
AAGATGCCTTCTGCATCCAGTGGTGAAGAAGCAGACGCTGGCAGCCTCCTGCCCACCACCAATGAGCTCT
CCCAAGCCTTAGCTGGGGCTGACTCCCTGGACAGTCCTCCCAGACCTCTGGAGAGATCCGTGGGCCAGCT
CCCCAGCCCCCCACTGCTGCCCACTCCGCCACCCAAGGCAAGCTCCAAAACCACAAAAAATGTCACAGGC
CAAGCCACACTCTTCCAAGCCTCCAGCATGAAGAGTGCCGACCCTTCCCTCCGGGGCCAGCTCTCCACAC
CCACGGGGTCTCCGCATCTCACCACGGTCCACCGGCCTCTTCCCCCAAGCCGCGTCATTGAGGAGCTGCA
CAGGGCGCTGGCCACGAAGCACCGCCAGGACAGTTTTCAAGGAAGAGAAAGTAAAGGGTCTCCAAAGAAG
CGGCTGGATGTCCGTCTGTCGAGAACGTCCAGCGTGGAGCGGGGCAAGGAGAGGGAGGAGGCTTGGAGCT
TTGACGGGGCATTGGAGAACAAGCGAACTGCCGCTAAGGAATCTGAGGAGAACAAGGAGAACCTGATCAT
AAATTCTGAACTCAAAGACGACTTGCTTTTGTATCAGGACGAGGAGGCGCTGAACGACTCCATTATTTCT
GGAACACTGCCACGGAAATGCAAGAAGGAGCTCCTGGCCGTGAAGCTAAGGAACCGGCCAAGCAAACAGG
AACTAGAAGACCGGAACATTTTCCCCAGAAGGACTGATGAAGAAAGACAGGAGATCCGGCAGCAGATCGA
GATGAAGCTTTCCAAACGGCTGAGCCAAAGACCTGCCGTGGAAGAGCTGGAGAGAAGAAATATCTTGAAA
CAAAGGAATGATCAGACAGAGCAGGAAGAAAGAAGAGAAATCAAGCAAAGATTGACAAGAAAGCTTAATC
AGAGACCCACTGTTGATGAATTAAGAGACAGAAAAATTCTGATACGATTCAGTGATTACGTGGAAGTAGC
AAAAGCGCAGGACTATGACAGGAGGGCAGACAAACCCTGGACGAGACTGTCAGCAGCAGATAAGGCAGCA
ATTCGTAAAGAATTAAATGAGTACAAAAGTAATGAAATGGAGGTACATGCATCAAGCAAGCACTTGACAA
GATTCCACAGGCCATAG

Translation (518 aa):
MDQTPPARPEYLVSGIRTPPVRRNSKLATLGRIFKPWKWRKKKNEKLKQTTSALEKKMAGRQGREELIKK
GLLEMMEQDAESKTCNPDGGPRSVQSEPPTPKSETLTSEDAQPGSPLATGTDQVSLDKPLSSAAHLDDAA
KMPSASSGEEADAGSLLPTTNELSQALAGADSLDSPPRPLERSVGQLPSPPLLPTPPPKASSKTTKNVTG
QATLFQASSMKSADPSLRGQLSTPTGSPHLTTVHRPLPPSRVIEELHRALATKHRQDSFQGRESKGSPKK
RLDVRLSRTSSVERGKEREEAWSFDGALENKRTAAKESEENKENLIINSELKDDLLLYQDEEALNDSIIS
GTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEIRQQIEMKLSKRLSQRPAVEELERRNILK
QRNDQTEQEERREIKQRLTRKLNQRPTVDELRDRKILIRFSDYVEVAKAQDYDRRADKPWTRLSAADKAA
IRKELNEYKSNEMEVHASSKHLTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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