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Report for CCDS1135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1135.1 Public Homo sapiens 1 PAQR6 24 110 108 CCDS HistoryNCBI Gene:79957Re-query CCDS DB by CCDS ID:1135.1Re-query CCDS DB by GeneID:79957See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 1135.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335852.6 ENSP00000338330.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335852.6Link to Ensembl Protein Viewer:ENSP00000338330.1Re-query CCDS DB by Nucleotide ID:ENST00000335852Re-query CCDS DB by Protein ID:ENSP00000338330
Original member Current member NCBI NM_024897.4 NP_079173.2 Accepted alive Link to Nucleotide Sequence:NM_024897.4Link to Protein Sequence:NP_079173.2Re-query CCDS DB by Nucleotide ID:NM_024897Re-query CCDS DB by Protein ID:NP_079173Link to BLAST:NP_079173.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079173.2 351 Q6TCH4-2 351 100% 0 0

Chromosomal Locations for CCDS 1135.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156243861 156244403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156244690 156244911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156245142 156245238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156245535 156245661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156245782 156245848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGTCGCCCCGCATGCGCCACATCTGCTACTTCCTCGACTACGGCGCGCTCAGCCTCTACAGTCTGGGCT
GCGCCTTCCCCTATGCCGCCTACTCCATGCCGGCCTCCTGGCTGCACGGCCACCTGCACCAGTTCTTTGT
GCCTGCCGCCGCACTCAACTCCTTCCTGTGCACCGGCCTCTCCTGCTACTCCCGTTTCCTGGAGCTGGAA
AGCCCTGGGCTCAGTAAGGTCCTCCGCACAGGAGCCTTCGCCTATCCATTCCTGTTCGACAACCTCCCAC
TCTTTTATCGGCTCGGGCTGTGCTGGGGCAGGGGCCACGGCTGTGGGCAGGAGGCCCTGAGCACCAGCCA
TGGCTACCATCTCTTCTGCGCGCTGCTCACTGGCTTCCTCTTCGCCTCCCACCTGCCTGAAAGGCTGGCA
CCAGGACGCTTTGATTACATCGGTGAGGGCACGCCTGGCCCGGCCCGGGAAGAGGCAGGGGCAGATGCCT
TCCCAGAGCACAGAATGAACTGGGCCACAGCCACCAGTTATTCCACATCTGTGCAGTGCTGGGCACCCAC
TTCCAGCTGGAGGCAGTGCTGGCTGATATGGGATCACGCAGAGCCTGGCTGGCCACACAGGAACCTGCCC
TGGGCCTGGCAGGCACAGTGGCCACACTGGTCTTGGCTGCAGCTGGGAACCTACTCATTATTGCTGCTTT
CACAGCCACCCTGCTTCGGGCCCCCAGTACATGCCCTCTGCTGCAGGGTGGCCCACTGGAGGGGGGTACC
CAGGCCAAACAACAGTGAGGCCCCATCCCTGACCCTGTCCTGGAGGGGGCAGAGGCCAGGCCCCAGTGCT
GACGAGGAGCCCAGATTTGGGCCTAATCAGGTGGGGACGCATCTCAGCCTGGAACCAACAGGGGCTGAGG
AGAGAGGGCACAGGAGAGAGGGCAGAGAAGAGGAGGGGTGTCTAGGGGGACTGGCAGAGTGTGAGAGGGA
CCGTGAGGGGGCTCTTGATGGGAGTGGAAGAAGTGCTGAGGGTCTGAGAGGGGAGATGCATGCGTGTCCA
GGCTGA

Translation (351 aa):
MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGLSCYSRFLELE
SPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYHLFCALLTGFLFASHLPERLA
PGRFDYIGEGTPGPAREEAGADAFPEHRMNWATATSYSTSVQCWAPTSSWRQCWLIWDHAEPGWPHRNLP
WAWQAQWPHWSWLQLGTYSLLLLSQPPCFGPPVHALCCRVAHWRGVPRPNNSEAPSLTLSWRGQRPGPSA
DEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGCLGGLAECERDREGALDGSGRSAEGLRGEMHACP
G


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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