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Report for CCDS14801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14801.1 Public Homo sapiens Y CDY1 24 110 108 CCDS HistoryNCBI Gene:9085Re-query CCDS DB by CCDS ID:14801.1Re-query CCDS DB by GeneID:9085See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14801.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306609.5 ENSP00000302968.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306609.5Link to Ensembl Protein Viewer:ENSP00000302968.4Re-query CCDS DB by Nucleotide ID:ENST00000306609Re-query CCDS DB by Protein ID:ENSP00000302968
Original member Current member NCBI NM_004680.3 NP_004671.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004680.3Link to Protein Sequence:NP_004671.1Re-query CCDS DB by Nucleotide ID:NM_004680Re-query CCDS DB by Protein ID:NP_004671Link to BLAST:NP_004671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004671.1 554 Q9Y6F8-2 554 100% 0 0

Chromosomal Locations for CCDS 14801.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 25622443 25624034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 25624455 25624527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGT
ATTTGGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTG
TGAAAAATGTGTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATGGACTACAACC
AGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTAAGAACT
CTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAACCGCAAGTTATTTGCTGCCAGCAAGAA
CGTTAGGAGAAAGGCAGCTTCAATTCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAG
ACCCTTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGGACC
CTATTGCAGCAGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTT
GTCACGTCCTGGTGCAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCGCAGATG
TCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAGACC
CATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATAT
TACTGATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGTGCC
AGCACATACAGAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCAACTAGATCGA
CAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGCTGCAGA
TGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTACTTT
GTGAAGCACTTAAGGAATAACAGAAACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGA
ATACTTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGATTGGACTAGGTGCATC
CATCCTGCCTCTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTT
GGACAGAGTCCAGATGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCAATGAAA
TGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATTTTT
GACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTG
GAAGAATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGTGTG
AGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAAATACCTCTGTTGGGATA
TAAAGCAGCCTTCCCTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGA

Translation (554 aa):
MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQKKLTWTTT
SRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKLFAASKNVRRKAASILSDTKNMEIINSTIE
TLAPDSPFDHKTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQM
SGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESA
STYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYF
VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTF
GQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVL
EECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRKTQNDQRWCP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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