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Report for CCDS55154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55154.1 Public Homo sapiens 7 FOXP2 24 110 108 CCDS HistoryNCBI Gene:93986Re-query CCDS DB by CCDS ID:55154.1Re-query CCDS DB by GeneID:93986See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403559.9 ENSP00000385069.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403559.9Link to Ensembl Protein Viewer:ENSP00000385069.4Re-query CCDS DB by Nucleotide ID:ENST00000403559Re-query CCDS DB by Protein ID:ENSP00000385069
Original member Current member EBI ENST00000703613.1 ENSP00000515397.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703613.1Link to Ensembl Protein Viewer:ENSP00000515397.1Re-query CCDS DB by Nucleotide ID:ENST00000703613Re-query CCDS DB by Protein ID:ENSP00000515397
Original member Current member NCBI NM_148900.4 NP_683698.2 Accepted alive Link to Nucleotide Sequence:NM_148900.4Link to Protein Sequence:NP_683698.2Re-query CCDS DB by Nucleotide ID:NM_148900Re-query CCDS DB by Protein ID:NP_683698Link to BLAST:NP_683698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683698.2 732 O15409-9 732 100% 0 0

Chromosomal Locations for CCDS 55154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 114426512 114426679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114534617 114534706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114628540 114628677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114629592 114629642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114629805 114630005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114631528 114631705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114642410 114642623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114644685 114644789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114652203 114652290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114653926 114654009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114658066 114658267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114659356 114659432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114659572 114659673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114662065 114662186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114663450 114663519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114664273 114664436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114689782 114689926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAA
GCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAGTGGTGACACCAGCTCTGAAGTAAGCACAGT
AGAACTGCTGCATCTGCAACAACAGCAGGCTCTCCAGGCAGCAAGACAACTTCTTTTACAGCAGCAAACA
AGTGGATTGAAATCTCCTAAGAGCAGTGATAAACAGAGACCACTGCAGGTGCCTGTGTCAGTGGCCATGA
TGACTCCCCAGGTGATCACCCCTCAGCAAATGCAGCAGATCCTTCAGCAACAAGTCCTGTCTCCTCAGCA
GCTACAAGCCCTTCTCCAACAACAGCAGGCTGTCATGCTGCAGCAGGATTTTTTGGATTCTGGATTGGAA
AATTTCAGAGCTGCCTTGGAAAAAAATCAACAACTACAAGAGTTTTACAAGAAACAGCAAGAGCAGTTAC
ATCTTCAGCTTTTGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCA
ACAACAACAACAACAGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCATCCT
GGAAAGCAAGCGAAAGAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATTGGCAGCCCAGCAGCTTGTCT
TCCAGCAGCAGCTTCTCCAGATGCAACAACTCCAGCAGCAGCAGCATCTGCTCAGCCTTCAGCGTCAGGG
ACTCATCTCCATTCCACCTGGCCAGGCAGCACTTCCTGTCCAATCGCTGCCTCAAGCTGGCTTAAGTCCT
GCTGAGATTCAGCAGTTATGGAAAGAAGTGACTGGAGTTCACAGTATGGAAGACAATGGCATTAAACATG
GAGGGCTAGACCTCACTACTAACAATTCCTCCTCGACTACCTCCTCCAACACTTCCAAAGCATCACCACC
AATAACTCATCATTCCATAGTGAATGGACAGTCTTCAGTTCTAAGTGCAAGACGAGACAGCTCGTCACAT
GAGGAGACTGGGGCCTCTCACACTCTCTATGGCCATGGAGTTTGCAAATGGCCAGGCTGTGAAAGCATTT
GTGAAGATTTTGGACAGTTTTTAAAGCACCTTAACAATGAACACGCATTGGATGACCGAAGCACTGCTCA
GTGTCGAGTGCAAATGCAGGTGGTGCAACAGTTAGAAATACAGCTTTCTAAAGAACGCGAACGTCTTCAA
GCAATGATGACCCACTTGCACATGCGACCCTCAGAGCCCAAACCATCTCCCAAACCTCTAAATCTGGTGT
CTAGTGTCACCATGTCGAAGAATATGTTGGAGACATCCCCACAGAGCTTACCTCAAACCCCTACCACACC
AACGGCCCCAGTCACCCCGATTACCCAGGGACCCTCAGTAATCACCCCAGCCAGTGTGCCCAATGTGGGA
GCCATACGAAGGCGACATTCAGACAAATACAACATTCCCATGTCATCAGAAATTGCCCCAAACTATGAAT
TTTATAAAAATGCAGATGTCAGACCTCCATTTACTTATGCAACTCTCATAAGGCAGGCTATCATGGAGTC
ATCTGACAGGCAGTTAACACTTAATGAAATTTACAGCTGGTTTACACGGACATTTGCTTACTTCAGGCGT
AATGCAGCAACTTGGAAGAATGCAGTACGTCATAATCTTAGCCTGCACAAGTGTTTTGTTCGAGTAGAAA
ATGTTAAAGGAGCAGTATGGACTGTGGATGAAGTAGAATACCAGAAGCGAAGGTCACAAAAGATAACAGG
AAGTCCAACCTTAGTAAAAAATATACCTACCAGTTTAGGCTATGGAGCAGCTCTTAATGCCAGTTTGCAG
GCTGCCTTGGCAGAGAGCAGTTTACCTTTGCTAAGTAATCCTGGACTGATAAATAATGCATCCAGTGGCC
TACTGCAGGCCGTCCACGAAGACCTCAATGGTTCTCTGGATCACATTGACAGCAATGGAAACAGTAGTCC
GGGCTGCTCACCTCAGCCGCACATACATTCAATCCACGTCAAGGAAGAGCCAGTGATTGCAGAGGATGAA
GACTGCCCAATGTCCTTAGTGACAACAGCTAATCACAGTCCAGAATTAGAAGACGACAGAGAGATTGAAG
AAGAGCCTTTATCTGAAGATCTGGAATGA

Translation (732 aa):
MMQESATETISNSSMNQNGMSTLSSQLDAGSRDGRSSGDTSSEVSTVELLHLQQQQALQAARQLLLQQQT
SGLKSPKSSDKQRPLQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQDFLDSGLE
NFRAALEKNQQLQEFYKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHP
GKQAKEQQQQQQQQQQLAAQQLVFQQQLLQMQQLQQQQHLLSLQRQGLISIPPGQAALPVQSLPQAGLSP
AEIQQLWKEVTGVHSMEDNGIKHGGLDLTTNNSSSTTSSNTSKASPPITHHSIVNGQSSVLSARRDSSSH
EETGASHTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKERERLQ
AMMTHLHMRPSEPKPSPKPLNLVSSVTMSKNMLETSPQSLPQTPTTPTAPVTPITQGPSVITPASVPNVG
AIRRRHSDKYNIPMSSEIAPNYEFYKNADVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRR
NAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRRSQKITGSPTLVKNIPTSLGYGAALNASLQ
AALAESSLPLLSNPGLINNASSGLLQAVHEDLNGSLDHIDSNGNSSPGCSPQPHIHSIHVKEEPVIAEDE
DCPMSLVTTANHSPELEDDREIEEEPLSEDLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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