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Report for CCDS47143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47143.1 Public Homo sapiens 4 SH3D19 24 110 108 CCDS HistoryNCBI Gene:152503Re-query CCDS DB by CCDS ID:47143.1Re-query CCDS DB by GeneID:152503See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427414.2 ENSP00000415694.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427414.2Link to Ensembl Protein Viewer:ENSP00000415694.1Re-query CCDS DB by Nucleotide ID:ENST00000427414Re-query CCDS DB by Protein ID:ENSP00000415694
Original member Current member NCBI NM_001128924.2 NP_001122396.1 Accepted alive Link to Nucleotide Sequence:NM_001128924.2Link to Protein Sequence:NP_001122396.1Re-query CCDS DB by Nucleotide ID:NM_001128924Re-query CCDS DB by Protein ID:NP_001122396Link to BLAST:NP_001122396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122396.1 731 Q5HYK7-3 731 100% 0 0

Chromosomal Locations for CCDS 47143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151122091 151122207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151127618 151127715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151128170 151128356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151132331 151132383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151133034 151133236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151135074 151135132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151137732 151137862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151139775 151139847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151143910 151144050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151147922 151148186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151149500 151149561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151159240 151159352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151174670 151175363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGAACATTATGAACACAGAACAAAGCCAAAATAGTATTGTTTCCAGAATTAAAGTGTTTGAGGGTCAGA
CAAACATAGAAACCTCAGGACTGCCCAAGAAACCAGAAATTACTCCACGTTCACTTCCTCCAAAGCCTAC
TGTTTCCTCAGGGAAACCTTCTGTAGCTCCCAAACCAGCTGCTAACAGAGCTTCTGGAGAGTGGGACTCT
GGGACTGAGAACAGACTCAAGGTGACCTCCAAGGAAGGACTCACCCCATACCCTCCCCTGCAAGAAGCGG
GAAGCATCCCAGTAACCAAACCTGAATTGCCAAAGAAACCAAACCCTGGCCTTATACGAAGTGTTAATCC
TGAGATTCCGGGAAGAGGGCCCCTGGCTGAGAGCTCTGATAGTGGGAAGAAAGTGCCAACTCCTGCCCCG
CGGCCTTTGCTGCTGAAGAAATCTGTTTCCTCAGAAAACCCCACCTACCCTTCAGCTCCACTGAAACCTG
TCACTGTTCCTCCCCGACTCGCAGGGGCATCACAAGCCAAAGCATACAAGTCACTGGGAGAAGGGCCCCC
AGCCAACCCCCCAGTTCCAGTTCTGCAGAGCAAGCCCTTGGTGGACATCGATCTCATCAGCTTTGATGAT
GATGTTTTGCCCACCCCATCGGGGAACCTGGCTGAAGAATCTGTTGGTTCAGAGATGGTTCTAGGTTTAC
ATGAGGATCCACAAAGTCCACCTCCTCTCCCTGCTGAAAAACCTATTGGAAACACTTTCAGTACAGTATC
TGGAAAGCTCAGTAATGTTGAGAGAACTAGAAACTTGGAATCCAACCACCCAGGTCAAACAGGAGGTTTT
GTGCGAGTACCCCCAAGGTTGCCACCGAGACCTGTGAATGGAAAAACCATTCCAACTCAACAGCCTCCAA
CCAAGGTGCCCCCTGAGAGACCACCTCCCCCAAAGCTTTCTGCAACCAGAAGATCTAATAAGAAACTGCC
TTTTAATCGATCCTCTTCTGACATGGATCTTCAGAAAAAACAAAGTAACTTGGCAACTGGACTCTCAAAA
GCCAAGAGTCAAGTTTTTAAAAATCAAGATCCGGTGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCT
ACAGTAAATACATGCGTGGGGATGTACTTGTGATGCTGAAGCAGACGGAAAATAATTACTTGGAGTGCCA
AAAGGGAGAAGACACTGGCAGAGTTCACCTGTCTCAAATGAAGATTATCACTCCACTTGATGAACATCTT
AGAAGCAGACCAAACGATCCAAGCCACGCTCAGAAGCCTGTTGACAGTGGTGCTCCTCATGCTGTCGTTC
TTCATGATTTCCCAGCAGAGCAAGTTGATGATTTGAACCTCACTTCTGGAGAAATTGTTTATCTTCTGGA
GAAGATAGATACAGATTGGTACAGAGGGAACTGTAGAAACCAGATTGGCATATTTCCTGCCAACTATGTC
AAAGTGATTATTGATATCCCAGAAGGAGGAAATGGGAAAAGAGAATGTGTTTCATCTCATTGTGTTAAAG
GCTCAAGATGTGTTGCTCGGTTTGAATATATTGGAGAGCAGAAGGATGAGTTGAGTTTCTCAGAGGGAGA
AATTATTATTCTTAAAGAGTATGTGAATGAGGAATGGGCCAGAGGAGAAGTTCGAGGCAGAACTGGGATT
TTCCCCCTGAACTTTGTGGAGCCTGTTGAGGATTATCCCACCTCTGGTGCAAATGTTTTAAGCACAAAGG
TACCACTGAAAACCAAAAAAGAAGATTCTGGCTCAAACTCTCAGGTTAACAGTCTTCCGGCAGAATGGTG
TGAAGCTCTTCACAGTTTTACAGCAGAGACCAGTGATGACTTATCATTCAAGAGGGGAGACCGGATCCAG
ATTCTGGAACGTCTGGATTCTGACTGGTGCAGGGGCAGACTGCAGGACAGGGAGGGGATCTTCCCAGCAG
TGTTTGTGAGGCCCTGCCCAGCTGAGGCAAAAAGTATGTTGGCCATAGTACCGAAGGGGAGGAAGGCCAA
AGCCTTATATGATTTCCGAGGGGAGAATGAAGATGAACTTTCCTTCAAGGCTGGAGATATAATAACAGAG
CTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACT
ACATACAGTTTCTACAGATCAGCTAG

Translation (731 aa):
MNIMNTEQSQNSIVSRIKVFEGQTNIETSGLPKKPEITPRSLPPKPTVSSGKPSVAPKPAANRASGEWDS
GTENRLKVTSKEGLTPYPPLQEAGSIPVTKPELPKKPNPGLIRSVNPEIPGRGPLAESSDSGKKVPTPAP
RPLLLKKSVSSENPTYPSAPLKPVTVPPRLAGASQAKAYKSLGEGPPANPPVPVLQSKPLVDIDLISFDD
DVLPTPSGNLAEESVGSEMVLGLHEDPQSPPPLPAEKPIGNTFSTVSGKLSNVERTRNLESNHPGQTGGF
VRVPPRLPPRPVNGKTIPTQQPPTKVPPERPPPPKLSATRRSNKKLPFNRSSSDMDLQKKQSNLATGLSK
AKSQVFKNQDPVLPPRPKPGHPLYSKYMRGDVLVMLKQTENNYLECQKGEDTGRVHLSQMKIITPLDEHL
RSRPNDPSHAQKPVDSGAPHAVVLHDFPAEQVDDLNLTSGEIVYLLEKIDTDWYRGNCRNQIGIFPANYV
KVIIDIPEGGNGKRECVSSHCVKGSRCVARFEYIGEQKDELSFSEGEIIILKEYVNEEWARGEVRGRTGI
FPLNFVEPVEDYPTSGANVLSTKVPLKTKKEDSGSNSQVNSLPAEWCEALHSFTAETSDDLSFKRGDRIQ
ILERLDSDWCRGRLQDREGIFPAVFVRPCPAEAKSMLAIVPKGRKAKALYDFRGENEDELSFKAGDIITE
LESVDDDWMSGELMGKSGIFPKNYIQFLQIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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