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Report for CCDS15487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15487.1 Public Mus musculus 1 Ppox 23 108 98 CCDS HistoryNCBI Gene:19044Re-query CCDS DB by CCDS ID:15487.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073120.10 ENSMUSP00000072863.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073120.10Link to Ensembl Protein Viewer:ENSMUSP00000072863.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073120Re-query CCDS DB by Protein ID:ENSMUSP00000072863
Original member Current member NCBI NM_008911.2 NP_032937.1 Accepted alive Link to Nucleotide Sequence:NM_008911.2Link to Protein Sequence:NP_032937.1Re-query CCDS DB by Nucleotide ID:NM_008911Re-query CCDS DB by Protein ID:NP_032937Link to BLAST:NP_032937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032937.1 477 P51175 477 100% 0 0

Chromosomal Locations for CCDS 15487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171277057 171277199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171277286 171277328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171277447 171277596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171277694 171277804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171277882 171278000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171278135 171278195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171279123 171279313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171279430 171279574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171279869 171280001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171280140 171280255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171280388 171280522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171280674 171280760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGGCCGGACTGTGATAGTACTTGGCGGAGGTATCAGTGGATTGGCCGCAAGTTATCATCTGATCCGAG
GCCCCAGTCCTCCTAAGGTGATCTTAGTGGAGGGCAGCAAGCGTTTGGGAGGATGGATCCGCTCAATCCG
AGGATCAGATGGTGCGATCTTTGAACTTGGACCTCGAGGGATTAGGCCGGCTGGAGCCCTGGGAGCCCGG
ACCCTGCTCCTGGTTTCTGAACTTGGCTTGGAGTCTGAAGTCTTGCCTGTCCGAGGGGATCACCCAGCTG
CCCAGAACAGGTTCCTGTATGTAGGCGGTACCCTGCACCCTCTACCCTCCGGCCTCAGGGGGCTACTCCG
TCCTTCACCCCCCTTCTCAAAACCTCTGTTTTGGGCTGGGCTGAGGGAGTTGCTGAAGCCCAGGGGCAAA
GAGCCTGATGAAACTGTGCACAGTTTTGCCCAGCGCCGCCTTGGACCTGAGGTGGCATCTTTAGCCATGG
ACAGTCTTTGCCGAGGAGTATTTGCTGGCAACAGCCGGGAGCTCAGCATCCGGTCCTGCTTTCCCAGTCT
CTTCCAAGCTGAACAAACCCACCGGTCCATATTGCTGGGGCTGCTGCTGGGCGCAGGACAGAGTCCCCAG
CCGGATTCCTCACTAATTCGTCAGGCCCGGGCTGAGCGATGGAGCCAGTGGTCACTCCGTGGAGGGCTGG
AGGTGTTGCCCCAGGCTCTTCACAATCACCTAGCAAGTAAAGGGGTCACTGTCCTCAGTGGGCAGCCAGT
CTGTGGGCTCAGCCTTCAGCCAGAAGGGCGCTGGAAGGTGTCTCTAGGGGACAGCAGTCTGGAGGCTGAC
CACATTATAAGTGCCATTCCAGCTTCAGAGCTCAGCAAGCTGCTCCCTGCCGAGGCTGCACCTCTAGCTC
GAATCCTGAGTACCATCAAGGCAGTGTCTGTTGCTGTGGTGAATCTGCAGTACCGAGGAGCTTGTCTGCC
TGTCCAGGGATTTGGACATTTGGTGCCATCGTCAGAAGACCCGACTGTCCTGGGAATTGTGTACGACTCG
GTGGCTTTTCCTGAACAGGATGGGAACCCCCCAAGCCTCAGAGTGACTGTGATGTTGGGAGGTTACTGGC
TACAGAAGCTAAAAGCTGCGGGCCACCAACTGTCTCCAGAGCTGTTCCAGCAACAAGCCCAGGAGGCAGC
CGCCACACAGTTAGGACTGAAAGAACCACCGAGTCACTGCCTGGTCCATCTACACAAGAACTGTATCCCT
CAGTATACAATAGGCCACTGGCAAAAACTAGACTCAGCTATGCAATTCCTGACGGCCCAGAGGTTGCCCC
TGACTTTGGCTGGAGCCTCCTATGAGGGGGTTGCTGTCAATGACTGTATAGAGAGTGGGCGCCAGGCAGC
AGTTGCTGTCCTGGGCACAGAATCTAACAGCTGA

Translation (477 aa):
MGRTVIVLGGGISGLAASYHLIRGPSPPKVILVEGSKRLGGWIRSIRGSDGAIFELGPRGIRPAGALGAR
TLLLVSELGLESEVLPVRGDHPAAQNRFLYVGGTLHPLPSGLRGLLRPSPPFSKPLFWAGLRELLKPRGK
EPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGQSPQ
PDSSLIRQARAERWSQWSLRGGLEVLPQALHNHLASKGVTVLSGQPVCGLSLQPEGRWKVSLGDSSLEAD
HIISAIPASELSKLLPAEAAPLARILSTIKAVSVAVVNLQYRGACLPVQGFGHLVPSSEDPTVLGIVYDS
VAFPEQDGNPPSLRVTVMLGGYWLQKLKAAGHQLSPELFQQQAQEAAATQLGLKEPPSHCLVHLHKNCIP
QYTIGHWQKLDSAMQFLTAQRLPLTLAGASYEGVAVNDCIESGRQAAVAVLGTESNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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