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Report for CCDS14220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14220.1 Public Homo sapiens X MAGEB3 24 110 108 CCDS HistoryNCBI Gene:4114Re-query CCDS DB by CCDS ID:14220.1Re-query CCDS DB by GeneID:4114See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 14220.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361644.4 ENSP00000355198.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361644.4Link to Ensembl Protein Viewer:ENSP00000355198.2Re-query CCDS DB by Nucleotide ID:ENST00000361644Re-query CCDS DB by Protein ID:ENSP00000355198
Original member Current member EBI ENST00000620842.1 ENSP00000478513.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620842.1Link to Ensembl Protein Viewer:ENSP00000478513.1Re-query CCDS DB by Nucleotide ID:ENST00000620842Re-query CCDS DB by Protein ID:ENSP00000478513
Original member Current member NCBI NM_001386865.1 NP_001373794.1 Accepted alive Link to Nucleotide Sequence:NM_001386865.1Link to Protein Sequence:NP_001373794.1Re-query CCDS DB by Nucleotide ID:NM_001386865Re-query CCDS DB by Protein ID:NP_001373794Link to BLAST:NP_001373794.1
Original member Current member NCBI NM_002365.5 NP_002356.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002365.5Link to Protein Sequence:NP_002356.2Re-query CCDS DB by Nucleotide ID:NM_002365Re-query CCDS DB by Protein ID:NP_002356Link to BLAST:NP_002356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373794.1 346 O15480 346 100% 0 0
NP_002356.2 346 O15480 346 100% 0 0

Chromosomal Locations for CCDS 14220.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 30235925 30236965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGCCTCGGGGTCAGAAGAGTACGCTCCATGCACGTGAGAAACGCCAGCAGACCCGGGGTCAGACCCAGG
ATCACCAGGGTGCTCAGATCACTGCAACTAACAAGAAAAAAGTATCCTTTTCATCCCCTCTTATTTTGGG
GGCTACTATCCAGAAAAAGTCTGCTGGTAGGTCACGTAGTGCTCTCAAGAAGCCTCAGAGAGCACTATCC
ACCACTACATCTGTAGATGTTTCTTACAAAAAGTCATACAAGGGAGCCAACAGCAAAATTGAGAAAAAGC
AAAGCTTCTCTCAGGGTCTATCCTCCACTGTGCAGTCTCGCACAGACCCTCTAATCATGAAGACAAATAT
GTTGGTGCAGTTCCTGATGGAAATGTACAAGATGAAAAAGCCCATTATGAAAGCAGATATGCTAAAAATT
GTCCAAAAAAGCCATAAGAATTGCTTCCCTGAGATCCTTAAAAAAGCTTCTTTCAACATGGAGGTGGTAT
TTGGTGTTGATTTAAAGAAAGTTGATTCTACCAAGGACTCCTATGTCCTTGTCAGCAAAATGGATCTCCC
CAACAATGGGACAGTGACTCGTGGGAGGGGATTTCCCAAGACAGGTCTCCTGCTGAATCTCCTGGGCGTG
ATCTTCATGAAGGGCAACTGTGCCACTGAGGAGAAGATCTGGGAATTCCTGAATAAGATGAGAATATATG
ATGGGAAGAAACACTTCATATTTGGGGAGCCCAGAAAGCTCATCACCCAAGATTTGGTGAAGCTTAAATA
CCTGGAGTACCGACAAGTGCCCAACAGTAATCCTGCACGCTATGAATTCCTGTGGGGTCCAAGAGCCCAT
GCTGAAACCAGCAAGATGAAGGTCCTGGAGTTTTGGGCCAAGGTCAATAAAACTGTCCCCAGTGCGTTCC
AGTTCTGGTATGAAGAGGCTTTGAGAGATGAGGAAGAAAGAGTCCAAGCTGCAGCTATGCTCAATGATGG
CAGTAGTGCCATGGGCAGAAAGTGTTCCAAGGCCAAGGCTAGCAGCTCTTCCCACGCCTAG

Translation (346 aa):
MPRGQKSTLHAREKRQQTRGQTQDHQGAQITATNKKKVSFSSPLILGATIQKKSAGRSRSALKKPQRALS
TTTSVDVSYKKSYKGANSKIEKKQSFSQGLSSTVQSRTDPLIMKTNMLVQFLMEMYKMKKPIMKADMLKI
VQKSHKNCFPEILKKASFNMEVVFGVDLKKVDSTKDSYVLVSKMDLPNNGTVTRGRGFPKTGLLLNLLGV
IFMKGNCATEEKIWEFLNKMRIYDGKKHFIFGEPRKLITQDLVKLKYLEYRQVPNSNPARYEFLWGPRAH
AETSKMKVLEFWAKVNKTVPSAFQFWYEEALRDEEERVQAAAMLNDGSSAMGRKCSKAKASSSSHA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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