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Report for CCDS91662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91662.1 Public Homo sapiens 12 SLCO1A2 24 110 108 CCDS HistoryNCBI Gene:6579Re-query CCDS DB by CCDS ID:91662.1Re-query CCDS DB by GeneID:6579See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91662.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458504.5 ENSP00000394854.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458504.5Link to Ensembl Protein Viewer:ENSP00000394854.1Re-query CCDS DB by Nucleotide ID:ENST00000458504Re-query CCDS DB by Protein ID:ENSP00000394854
Original member Current member NCBI NM_001386922.1 NP_001373851.1 Accepted alive Link to Nucleotide Sequence:NM_001386922.1Link to Protein Sequence:NP_001373851.1Re-query CCDS DB by Nucleotide ID:NM_001386922Re-query CCDS DB by Protein ID:NP_001373851Link to BLAST:NP_001373851.1
Original member Current member NCBI NM_001386929.1 NP_001373858.1 Accepted alive Link to Nucleotide Sequence:NM_001386929.1Link to Protein Sequence:NP_001373858.1Re-query CCDS DB by Nucleotide ID:NM_001386929Re-query CCDS DB by Protein ID:NP_001373858Link to BLAST:NP_001373858.1
Original member Current member NCBI NM_001386937.1 NP_001373866.1 Accepted alive Link to Nucleotide Sequence:NM_001386937.1Link to Protein Sequence:NP_001373866.1Re-query CCDS DB by Nucleotide ID:NM_001386937Re-query CCDS DB by Protein ID:NP_001373866Link to BLAST:NP_001373866.1
Original member Current member NCBI NM_001386938.1 NP_001373867.1 Accepted alive Link to Nucleotide Sequence:NM_001386938.1Link to Protein Sequence:NP_001373867.1Re-query CCDS DB by Nucleotide ID:NM_001386938Re-query CCDS DB by Protein ID:NP_001373867Link to BLAST:NP_001373867.1
Original member Current member NCBI NM_001386939.1 NP_001373868.1 Accepted alive Link to Nucleotide Sequence:NM_001386939.1Link to Protein Sequence:NP_001373868.1Re-query CCDS DB by Nucleotide ID:NM_001386939Re-query CCDS DB by Protein ID:NP_001373868Link to BLAST:NP_001373868.1
Original member Current member NCBI NM_001386940.1 NP_001373869.1 Accepted alive Link to Nucleotide Sequence:NM_001386940.1Link to Protein Sequence:NP_001373869.1Re-query CCDS DB by Nucleotide ID:NM_001386940Re-query CCDS DB by Protein ID:NP_001373869Link to BLAST:NP_001373869.1
Original member Current member NCBI NM_001386962.1 NP_001373891.1 Accepted alive Link to Nucleotide Sequence:NM_001386962.1Link to Protein Sequence:NP_001373891.1Re-query CCDS DB by Nucleotide ID:NM_001386962Re-query CCDS DB by Protein ID:NP_001373891Link to BLAST:NP_001373891.1

Chromosomal Locations for CCDS 91662.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 21269548 21269767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21274469 21274586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21275360 21275424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21292164 21292336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21293945 21294110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21295597 21295792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21297404 21297568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21300348 21300569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21301171 21301269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21304427 21304573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21306882 21306927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGAAAATGGAACCCAGATTTTAAGACCAACGCAGGATCCATCAGAGTGTACAAAGGAAGTTAAATCAT
TAATGTGGGTGTACGTCCTAGTAGGCAATATTGTACGTGGAATGGGTGAAACTCCCATCCTGCCTTTGGG
TATTTCCTATATAGAAGATTTTGCCAAATTTGAAAATTCTCCTTTATATATTGGGCTTGTAGAAACAGGA
GCTATTATTGGTCCTTTGATTGGACTTTTGTTGGCATCATTCTGTGCAAATGTTTATGTTGACACTGGAT
TTGTGAACACAGATGATCTGATCATAACTCCCACTGACACTCGTTGGGTCGGTGCATGGTGGTTTGGCTT
TCTGATTTGTGCAGGAGTTAACGTGCTCACTGCCATTCCTTTTTTCTTTTTGCCCAACACACTTCCAAAG
GAAGGACTAGAGACTAATGCTGACATCATTAAAAATGAAAATGAAGACAAACAAAAAGAAGAGGTCAAGA
AGGAAAAATATGGAATCACTAAAGATTTTCTACCTTTCATGAAAAGTCTTTCCTGCAATCCAATTTATAT
GCTTTTCATACTTGTAAGTGTGATACAGTTCAATGCATTCGTTAACATGATCTCCTTCATGCCTAAATAC
CTAGAACAGCAATATGGAATATCATCTTCAGATGCAATCTTTCTAATGGGTATTTATAACTTACCTCCAA
TATGTATTGGATATATAATTGGTGGTTTAATTATGAAGAAGTTCAAGATTACTGTCAAACAAGCTGCCCA
CATAGGATGTTGGTTATCCTTACTTGAGTATCTTCTCTATTTTTTATCTTTTCTCATGACTTGTGAAAAT
TCTTCAGTTGTTGGAATAAATACCTCTTATGAAGGAATTCCACAAGATTTATATGTGGAAAATGACATCT
TTGCTGATTGCAATGTGGATTGCAACTGTCCATCTAAAATATGGGATCCTGTGTGTGGAAACAATGGCTT
GTCATATCTGTCAGCTTGTCTTGCTGGTTGTGAGACATCCATTGGAACGGGAATAAACATGGTGTTCCAA
AATTGCAGCTGTATTCAAACATCAGGAAATTCATCTGCAGTTCTTGGGCTGTGCGACAAAGGACCTGACT
GTTCCTTGATGCTCCAGTACTTCCTAATCTTGTCAGCGATGAGCAGTTTCATTTATTCTTTGGCTGCCAT
ACCTGGATATATGGTTCTCTTGAGGTGTATGAAATCTGAAGAGAAGTCCCTTGGTGTGGGATTACATACA
TTTTGCACAAGAGTATTTGCTGGCATTCCTGCACCTATATATTTTGGCGCTTTAATGGATTCCACATGTT
TACACTGGGGAACTTTGAAATGTGGTGAGTCAGGGGCATGCAGGATATATGATTCCACCACCTTCAGATA
CATCTACCTCGGATTGCCGGCAGCACTAAGAGGATCAAGCTTTGTTCCAGCCTTAATCATCTTAATTCTT
TTGAGGAAGTGTCATCTACCTGGTGAAAATGCCTCTTCAGGAACAGAGCTTATAGAGACAAAAGTCAAAG
GGAAGGAAAATGAGTGCAAAGATATATACCAAAAGTCCACGGTTTTGAAAGATGATGAATTGAAAACTAA
ATTGTAA

Translation (538 aa):
MENGTQILRPTQDPSECTKEVKSLMWVYVLVGNIVRGMGETPILPLGISYIEDFAKFENSPLYIGLVETG
AIIGPLIGLLLASFCANVYVDTGFVNTDDLIITPTDTRWVGAWWFGFLICAGVNVLTAIPFFFLPNTLPK
EGLETNADIIKNENEDKQKEEVKKEKYGITKDFLPFMKSLSCNPIYMLFILVSVIQFNAFVNMISFMPKY
LEQQYGISSSDAIFLMGIYNLPPICIGYIIGGLIMKKFKITVKQAAHIGCWLSLLEYLLYFLSFLMTCEN
SSVVGINTSYEGIPQDLYVENDIFADCNVDCNCPSKIWDPVCGNNGLSYLSACLAGCETSIGTGINMVFQ
NCSCIQTSGNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGYMVLLRCMKSEEKSLGVGLHT
FCTRVFAGIPAPIYFGALMDSTCLHWGTLKCGESGACRIYDSTTFRYIYLGLPAALRGSSFVPALIILIL
LRKCHLPGENASSGTELIETKVKGKENECKDIYQKSTVLKDDELKTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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