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Report for CCDS92563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92563.1 Public Homo sapiens 19 KCNN1 24 110 108 CCDS HistoryNCBI Gene:3780Re-query CCDS DB by CCDS ID:92563.1Re-query CCDS DB by GeneID:3780See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 92563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000684725.1 ENSP00000506918.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684725.1Link to Ensembl Protein Viewer:ENSP00000506918.1Re-query CCDS DB by Nucleotide ID:ENST00000684725Re-query CCDS DB by Protein ID:ENSP00000506918
Original member Current member EBI ENST00000682421.1 ENSP00000507047.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682421.1Link to Ensembl Protein Viewer:ENSP00000507047.1Re-query CCDS DB by Nucleotide ID:ENST00000682421Re-query CCDS DB by Protein ID:ENSP00000507047
Original member Current member NCBI NM_001386977.1 NP_001373906.1 Accepted alive Link to Nucleotide Sequence:NM_001386977.1Link to Protein Sequence:NP_001373906.1Re-query CCDS DB by Nucleotide ID:NM_001386977Re-query CCDS DB by Protein ID:NP_001373906Link to BLAST:NP_001373906.1

Chromosomal Locations for CCDS 92563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17973889 17974290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17975092 17975187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17981709 17982127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17985312 17985453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17988415 17988525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17989716 17989843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17993490 17993559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17998152 17998406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGAACAGCCACAGCTACAATGGCAGCGTGGGGCGGCCGCTGGGCAGCGGGCCGGGCGCCCTGGGACGAG
ACCCTCCGGACCCTGAGGCCGGCCACCCCCCACAACCCCCGCACAGCCCGGGCCTCCAGGTGGTAGTGGC
CAAGAGTGAGCCAGCCCGGCCCTCACCCGGCAGCCCCCGGGGGCAGCCCCAGGACCAGGACGATGACGAG
GATGATGAGGAAGATGAGGCCGGCAGGCAGAGAGCCTCGGGGAAACCCTCAAATGTGGGCCACCGCCTGG
GCCACCGGCGGGCGCTCTTCGAGAAGCGGAAGCGCCTCAGCGACTATGCCCTCATTTTCGGCATGTTTGG
CATCGTCGTCATGGTGACGGAGACCGAGCTGTCCTGGGGGGTGTACACCAAGGAGTCTCTGTACTCATTC
GCACTCAAATGCCTCATCAGCCTCTCCACGGCCATCCTGCTGGGTCTCGTTGTCCTCTACCATGCCCGGG
AGATCCAGCTGTTCATGGTGGACAACGGGGCTGATGACTGGCGCATCGCCATGACCTGCGAGCGCGTGTT
CCTCATCTCGCTAGAGCTGGCAGTGTGCGCCATTCACCCGGTGCCCGGCCACTACCGCTTCACGTGGACG
GCGCGGCTGGCCTTCACGTACGCGCCCTCGGTGGCCGAGGCCGACGTGGACGTGCTGCTGTCCATCCCCA
TGTTCCTGCGCCTCTACCTGCTGGGCCGGGTGATGCTACTGCACAGCAAAATCTTCACGGACGCCTCGAG
CCGCAGCATCGGGGCCCTCAACAAGATCACCTTCAACACGCGCTTCGTCATGAAGACACTCATGACCATC
TGCCCCGGCACCGTGCTGCTGGTCTTCAGCATCTCCTCCTGGATCATCGCAGCCTGGACCGTGCGCGTCT
GCGAGAGGTACCACGACAAGCAGGAAGTGACCAGCAACTTCCTGGGGGCCATGTGGCTGATTTCCATCAC
CTTCCTCTCCATTGGCTACGGCGACATGGTGCCCCACACCTACTGCGGGAAGGGTGTGTGCCTGCTCACT
GGCATCATGGGAGCTGGCTGTACCGCGCTCGTGGTGGCTGTGGTGGCTCGGAAGCTGGAGCTCACCAAGG
CTGAGAAGCACGTGCACAACTTCATGATGGACACTCAGCTCACCAAGCGGGTAAAAAACGCCGCTGCTAA
CGTTCTCAGGGAGACGTGGCTCATCTACAAACATACCAGGCTGGTGAAGAAGCCAGACCAAGCCCGGGTT
CGGAAACACCAGCGTAAGTTCCTCCAAGCCATCCATCAGCTCCGGAGTGTGAAGATCGAGCAAGGGAAGC
TGAACGACCAGGCTAACACGCTTACCGACCTAGCCAAGACCCAGACCGTCATGTACGACCTTGTATCGGA
GCTGCACGCTCAGCACGAGGAGCTGGAGGCCCGCCTGGCCACCCTGGAAAGCCGCTTGGATGCGCTGGGT
GCCTCTCTACAGGCCCTGCCTGGCCTCATCGCCCAAGCCATACGCCCACCCCCGCCTCCCCTGCCTCCCA
GGCCCGGCCCCGGCCCCCAAGACCAGGCAGCCCGGAGCTCCCCCTGCCGGTGGACGCCCGTGGCCCCCTC
GGACTGCGGGTGA

Translation (540 aa):
MNSHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPRGQPQDQDDDE
DDEEDEAGRQRASGKPSNVGHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSF
ALKCLISLSTAILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWT
ARLAFTYAPSVAEADVDVLLSIPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTI
CPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLT
GIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARV
RKHQRKFLQAIHQLRSVKIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLDALG
ASLQALPGLIAQAIRPPPPPLPPRPGPGPQDQAARSSPCRWTPVAPSDCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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